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Commit 8980f2a5 authored by incardon's avatar incardon
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Reverting to previous interpolation untill clarification

parent 0f84683a
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Showing with 757 additions and 359 deletions
src/Solvers/petsc_solver.hpp
View file @ 8980f2a5
......@@ -717,6 +717,23 @@ class petsc_solver<double>
KSPDestroy(&ksp);
}
/*! \brief Return the norm error of the solution
*
* \param x_ the solution
* \param b_ the right-hand-side
*
* \return the solution error
*
*/
static solError getSolNormError(const Vec & b_, const Vec & x_,KSP ksp)
{
Mat A_;
Mat P_;
KSPGetOperators(ksp,&A_,&P_);
return getSolNormError(A_,b_,x_);
}
/*! \brief Return the norm error of the solution
*
* \param A_ the matrix that identity the linear system
......@@ -1259,6 +1276,20 @@ public:
return getSolNormError(A.getMat(),b.getVec(),x.getVec());
}
/*! \brief It return the resiual error
*
* \param A Sparse matrix
* \param x solution
* \param b right-hand-side
*
* \return the solution error norms
*
*/
solError get_residual_error(const Vector<double,PETSC_BASE> & x, const Vector<double,PETSC_BASE> & b)
{
return getSolNormError(b.getVec(),x.getVec(),ksp);
}
/*! \brief Here we invert the matrix and solve the system
*
* \param A sparse matrix
......
src/interpolation/interpolation.hpp
View file @ 8980f2a5
......@@ -16,48 +16,18 @@
constexpr int inte_m2p = 0;
constexpr int inte_p2m = 1;
template<unsigned int n_ele, typename T>
struct agg_arr
{
T ele[n_ele];
};
/*! \brief multiply the src by coeff for several types T
*
* \tparam type T
*
*/
template<typename T>
struct mul_inte
{
/*! \brief multiply the src by coeff for several types T
*
* \param result the result of the multiplication
* \param coeff coefficent to use for of the multiplication
* \param src source
*
*/
inline static void value(T & result, const T & coeff, const T & src)
{
result += coeff * src;
}
};
/*! \brief multiply the src by coeff for several types T
*
* \tparam type T
*
*/
template<typename T, unsigned int N1>
struct mul_inte<T[N1]>
{
/*! \brief multiply the src by coeff for several types T
*
* \param result the result of the multiplication
* \param coeff coefficent to use for of the multiplication
* \param src source
*
*/
inline static void value(T (& result)[N1], const T & coeff, const T (& src)[N1])
{
for (size_t i = 0 ; i < N1 ; i++)
......@@ -65,21 +35,9 @@ struct mul_inte<T[N1]>
}
};
/*! \brief multiply the src by coeff for several types T
*
* \tparam type T
*
*/
template<typename T, unsigned int N1, unsigned int N2>
struct mul_inte<T[N1][N2]>
{
/*! \brief multiply the src by coeff for several types T
*
* \param result the result of the multiplication
* \param coeff coefficent to use for of the multiplication
* \param src source
*
*/
inline static void value(T (& result)[N1][N2], const T & coeff, const T (& src)[N1][N2])
{
for (size_t i = 0 ; i < N1 ; i++)
......@@ -88,158 +46,34 @@ struct mul_inte<T[N1][N2]>
}
};
/*! \brief Class that select the operation to do differently if we are doing Mesh to particle (m2p) or particle to mesh (p2m)
*
* \tparam prp_g property of the grid to interpolate
* \tparam prp_v property of the vector to interpolate
* \param M2P or P2M
*
*/
template<unsigned int np, unsigned int prp_g, unsigned int prp_v,unsigned int m2p_or_p2m>
template<unsigned int prp_g, unsigned int prp_v,unsigned int m2p_or_p2m>
struct inte_template
{
/*! \brief Evaluate the interpolation
*
* \tparam np number of kernel points in one direction
* \tparam grid type of grid
* \tparam vector type of vector
* \tparam iterator type of the iterator
*
* \param gd grid for interpolation
* \param vd vector for interpolation
* \param k_dist grid key grid point for interpolation
* \param key_p particle for interpolation
* \param a_int interpolation coefficients pre-calculated
* \param key indicate which pre-calculated coefficient we have to use
*
*/
template<typename grid, typename vector, typename iterator> inline static void value(grid & gd,
template<typename grid, typename vector, typename iterator, typename key_type> inline static void value(grid & gd,
vector & vd,
const grid_dist_lin_dx & k_dist,
const grid_dist_key_dx<vector::dims> & k_dist,
iterator & key_p,
typename vector::stype (& a_int)[openfpm::math::pow(vector::dims,np)],
const size_t & key)
const grid_cpu<vector::dims,aggregate<typename vector::stype>> & a_int,
const key_type & key)
{
mul_inte<typename std::remove_reference<decltype(gd.template get<prp_g>(k_dist))>::type>::value(gd.template get<prp_g>(k_dist),a_int[key],vd.template getProp<prp_v>(key_p));
mul_inte<typename std::remove_reference<decltype(gd.template get<prp_g>(k_dist))>::type>::value(gd.template get<prp_g>(k_dist),a_int.template get<0>(key),vd.template getProp<prp_v>(key_p));
}
};
/*! \brief Class that select the operation to do differently if we are doing Mesh to particle (m2p) or particle to mesh (p2m)
*
* \tparam prp_g property of the grid to interpolate
* \tparam prp_v property of the vector to interpolate
* \param M2P or P2M
*
*/
template<unsigned int np, unsigned int prp_g, unsigned int prp_v>
struct inte_template<np,prp_g,prp_v,inte_m2p>
template<unsigned int prp_g, unsigned int prp_v>
struct inte_template<prp_g,prp_v,inte_m2p>
{
/*! \brief Evaluate the interpolation
*
* \tparam grid type of grid
* \tparam vector type of vector
* \tparam iterator type of the iterator
* \tparam key_type type of the key
*
* \param gd grid for interpolation
* \param vd vector for interpolation
* \param k_dist grid key grid point for interpolation
* \param key_p particle for interpolation
* \param a_int interpolation coefficients pre-calculated
* \param key indicate which pre-calculated coefficient we have to use
*
*/
template<typename grid, typename vector, typename iterator> inline static void value(grid & gd,
template<typename grid, typename vector, typename iterator, typename key_type> inline static void value(grid & gd,
vector & vd,
const grid_dist_lin_dx & k_dist,
const grid_dist_key_dx<vector::dims> & k_dist,
iterator & key_p,
typename vector::stype (& a_int)[openfpm::math::pow(vector::dims,np)],
const size_t & key)
{
mul_inte<typename std::remove_reference<decltype(gd.template get<prp_g>(k_dist))>::type>::value(vd.template getProp<prp_v>(key_p),a_int[key],gd.template get<prp_g>(k_dist));
}
};
/*! \brief Calculate aint
*
*
*/
template<unsigned int dims, typename vector, unsigned int np>
struct calculate_aint
{
static inline void value(size_t (& sz)[vector::dims],
typename vector::stype a_int[openfpm::math::pow(vector::dims,np)],
typename vector::stype (& a)[vector::dims][np])
{
grid_sm<vector::dims,void> gs(sz);
grid_key_dx_iterator<vector::dims> kit(gs);
size_t s = 0;
while (kit.isNext())
{
auto key = kit.get();
a_int[s] = 1;
for (size_t i = 0 ; i < vector::dims ; i++)
a_int[s] *= a[i][key.get(i)];
s++;
++kit;
}
}
};
/*! \brief Calculate aint 2D
*
*
*/
template<typename vector, unsigned int np>
struct calculate_aint<2,vector,np>
{
static inline void value(size_t (& sz)[vector::dims],
typename vector::stype a_int[openfpm::math::pow(vector::dims,np)],
typename vector::stype (& a)[vector::dims][np])
const grid_cpu<vector::dims,aggregate<typename vector::stype>> & a_int,
const key_type & key)
{
size_t s = 0;
for (size_t i = 0 ; i < np ; i++)
{
for (size_t j = 0 ; j < np ; j++)
{
a_int[s] = a[0][j]*a[1][i];
s++;
}
}
mul_inte<typename std::remove_reference<decltype(gd.template get<prp_g>(k_dist))>::type>::value(vd.template getProp<prp_v>(key_p),a_int.template get<0>(key),gd.template get<prp_g>(k_dist));
}
};
/*! \brief Calculate aint
*
*
*/
template<typename vector, unsigned int np>
struct calculate_aint<3,vector,np>
{
static inline void value(size_t (& sz)[vector::dims],
typename vector::stype a_int[openfpm::math::pow(vector::dims,np)],
typename vector::stype (& a)[vector::dims][np])
{
size_t s = 0;
for (size_t i = 0 ; i < np ; i++)
{
for (size_t j = 0 ; j < np ; j++)
{
for (size_t k = 0 ; k < np ; k++)
{
a_int[s] = a[0][k]*a[1][j]*a[2][i];
s++;
}
}
}
}
};
/*! \brief return the sub-domain where this particle must be interpolated
*
......@@ -271,133 +105,113 @@ inline size_t getSub(Point<vector::dims,typename vector::stype> & p,
return (size_t)-1;
}
template<typename vector,typename kernel>
struct inte_calc_impl
template<unsigned int prp_g, unsigned int prp_v, unsigned int m2p_or_p2m, typename kernel, typename iterator, typename vector, typename grid, typename grid_inte>
inline void inte_calc(iterator & it,
vector & vd,
const Box<vector::dims,typename vector::stype> & domain,
int (& ip)[vector::dims][kernel::np],
grid & gd,
const typename vector::stype (& dx)[vector::dims],
typename vector::stype (& xp)[vector::dims],
const grid_inte & a_int,
typename vector::stype (& a)[vector::dims][kernel::np],
typename vector::stype (& x)[vector::dims][kernel::np],
size_t (& sz)[vector::dims],
const CellList<vector::dims,typename vector::stype,Mem_fast<vector::dims,typename vector::stype>,shift<vector::dims,typename vector::stype>> & geo_cell)
{
//! Type of the calculations
typedef typename vector::stype arr_type;
template<unsigned int prp_g, unsigned int prp_v, unsigned int m2p_or_p2m, typename iterator, typename grid>
static inline void inte_calc(iterator & it,
vector & vd,
const Box<vector::dims,typename vector::stype> & domain,
int (& ip)[vector::dims][kernel::np],
grid & gd,
const typename vector::stype (& dx)[vector::dims],
typename vector::stype (& xp)[vector::dims],
typename vector::stype (& a_int)[openfpm::math::pow(vector::dims,kernel::np)],
typename vector::stype (& a)[vector::dims][kernel::np],
typename vector::stype (& x)[vector::dims][kernel::np],
size_t (& sz)[vector::dims],
const CellList<vector::dims,typename vector::stype,Mem_fast<vector::dims,typename vector::stype>,shift<vector::dims,typename vector::stype>> & geo_cell,
openfpm::vector<agg_arr<openfpm::math::pow(vector::dims,kernel::np),typename vector::stype>> & offsets)
{
auto key_p = it.get();
auto key_p = it.get();
Point<vector::dims,typename vector::stype> p = vd.getPos(key_p);
Point<vector::dims,typename vector::stype> p = vd.getPos(key_p);
// On which sub-domain we interpolate the particle
size_t sub = getSub<vector>(p,geo_cell,gd);
// On which sub-domain we interpolate the particle
size_t sub = getSub<vector>(p,geo_cell,gd);
typename vector::stype x0[vector::dims];
typename vector::stype x0[vector::dims];
// calculate the position of the particle in the grid
// coordinated
for (size_t i = 0 ; i < vector::dims ; i++)
x0[i] = (p.get(i)-domain.getLow(i))*dx[i];
// calculate the position of the particle in the grid
// coordinated
for (size_t i = 0 ; i < vector::dims ; i++)
x0[i] = (p.get(i)-domain.getLow(i))*dx[i];
// convert into integer
for (size_t i = 0 ; i < vector::dims ; i++)
ip[i][0] = (int)x0[i];
// convert into integer
for (size_t i = 0 ; i < vector::dims ; i++)
ip[i][0] = (int)x0[i];
// convert the global grid position into local grid position
grid_key_dx<vector::dims> base;
// convert the global grid position into local grid position
grid_key_dx<vector::dims> base;
for (size_t i = 0 ; i < vector::dims ; i++)
base.set_d(i,ip[i][0] - gd.getLocalGridsInfo().get(sub).origin.get(i) - (long int)kernel::np/2 + 1);
// convenient grid of points
for (size_t j = 0 ; j < kernel::np-1 ; j++)
{
for (size_t i = 0 ; i < vector::dims ; i++)
base.set_d(i,ip[i][0] - gd.getLocalGridsInfo().get(sub).origin.get(i) - (long int)kernel::np/2 + 1);
ip[i][j+1] = (int)ip[i][j]+1;
}
// convenient grid of points
for (size_t i = 0 ; i < vector::dims ; i++)
xp[i] = x0[i] - ip[i][0];
for (size_t j = 0 ; j < kernel::np-1 ; j++)
{
for (size_t i = 0 ; i < vector::dims ; i++)
ip[i][j+1] = (int)ip[i][j]+1;
}
for (long int j = 0 ; j < kernel::np ; j++)
{
for (size_t i = 0 ; i < vector::dims ; i++)
x[i][j] = - xp[i] + typename vector::stype((long int)j - (long int)kernel::np/2 + 1);
}
for (size_t j = 0 ; j < kernel::np ; j++)
{
for (size_t i = 0 ; i < vector::dims ; i++)
xp[i] = x0[i] - ip[i][0];
a[i][j] = kernel::value(x[i][j],j);
}
for (long int j = 0 ; j < kernel::np ; j++)
{
for (size_t i = 0 ; i < vector::dims ; i++)
x[i][j] = - xp[i] + typename vector::stype((long int)j - (long int)kernel::np/2 + 1);
}
grid_sm<vector::dims,void> gs(sz);
grid_key_dx_iterator<vector::dims> kit(gs);
for (size_t j = 0 ; j < kernel::np ; j++)
{
for (size_t i = 0 ; i < vector::dims ; i++)
a[i][j] = kernel::value(x[i][j],j);
}
while (kit.isNext())
{
auto key = kit.get();
calculate_aint<vector::dims,vector,kernel::np>::value(sz,a_int,a);
a_int.template get<0>(key) = 1;
grid_dist_lin_dx k_dist_lin;
k_dist_lin.setSub(sub);
for (size_t i = 0 ; i < vector::dims ; i++)
a_int.template get<0>(key) *= a[i][key.get(i)];
size_t k = 0;
auto & gs_info = gd.get_loc_grid(sub).getGrid();
++kit;
}
size_t lin_base = gs_info.LinId(base);
grid_key_dx_iterator<vector::dims> kit2(gs);
grid_dist_key_dx<vector::dims> k_dist;
k_dist.setSub(sub);
#pragma omp simd
for (size_t i = 0 ; i < openfpm::math::pow(vector::dims,kernel::np) ; i++)
{
size_t lin = offsets.get(sub).ele[k] + lin_base;
k_dist_lin.getKeyRef() = lin;
while (kit2.isNext())
{
auto key = kit2.get();
inte_template<kernel::np,prp_g,prp_v,m2p_or_p2m>::value(gd,vd,k_dist_lin,key_p,a_int,k);
for (size_t i = 0 ; i < vector::dims ; i++)
k_dist.getKeyRef().set_d(i,key.get(i) + base.get(i));
k++;
}
inte_template<prp_g,prp_v,m2p_or_p2m>::value(gd,vd,k_dist,key_p,a_int,key);
++kit2;
}
};
}
/*! \brief Main class for interpolation Particle to mest p2m and Mesh to particle m2p
*
* This function is the main class to interpolate from particle to mesh and mesh to particle
*
* \tparam vector type of vector for interpolation
* \tparam grid type of grid for interpolation
* \tparam interpolation kernel
*
*/
template<typename vector,typename grid, typename kernel>
class interpolate
{
//! Cell list used to convert particles position to sub-domain
CellList<vector::dims,typename vector::stype,Mem_fast<vector::dims,typename vector::stype>,shift<vector::dims,typename vector::stype>> geo_cell;
/*! Structure to order boxes by volume
*
*
*
*/
struct Box_vol
{
//! Box
Box<vector::dims,size_t> bv;
//! Calculated volume
size_t vol;
/*! \brief operator to reorder
*
* \param bv box to compare with
*
* \return true if bv has volume bigger volume
*
*/
bool operator<(const Box_vol & bv)
void operator<(const Box_vol & bv)
{
return vol < bv.vol;
}
......@@ -409,53 +223,9 @@ class interpolate
//! grid
grid & gd;
//! Type of the calculations
typedef typename vector::stype arr_type;
/*! \brief It calculate the interpolation stencil offsets
*
* \param array where to store offsets
* \param sz kernel stencil points in each direction
*
*/
void calculate_the_offsets(openfpm::vector<agg_arr<openfpm::math::pow(vector::dims,kernel::np),typename vector::stype>> & offsets, size_t (& sz)[vector::dims])
{
offsets.resize(gd.getN_loc_grid());
for (size_t i = 0 ; i < offsets.size() ; i++)
{
auto & loc_grid = gd.get_loc_grid(i);
const grid_sm<vector::dims,void> & gs = loc_grid.getGrid();
grid_sm<vector::dims,void> gs2(sz);
grid_key_dx_iterator<vector::dims> kit2(gs2);
size_t k = 0;
while (kit2.isNext())
{
auto key = kit2.get();
long int lin = gs.LinId(key);
offsets.get(i).ele[k] = lin;
++k;
++kit2;
}
}
}
public:
/*! \brief construct an interpolation object between a grid and a vector
*
* When possible and easy to do we suggest to retain the object
*
* \param vd interpolation vector
* \param gd interpolation grid
*
*/
interpolate(vector & vd, grid & gd)
:vd(vd),gd(gd)
{
......@@ -496,16 +266,6 @@ public:
}
};
/*! \brief Interpolate particles to mesh
*
* Most of the time the particle set and the mesh are the same
* as the one used in the constructor. They also can be different
* as soon as they have the same decomposition
*
* \param gd grid or mesh
* \param vd particle set
*
*/
template<unsigned int prp_v, unsigned int prp_g> void p2m(vector & vd, grid & gd)
{
#ifdef SE_CLASS1
......@@ -529,16 +289,6 @@ public:
for (size_t i = 0 ; i < vector::dims ; i++)
dx[i] = 1.0/gd.spacing(i);
size_t sz[vector::dims];
for (size_t i = 0 ; i < vector::dims ; i++)
sz[i] = kernel::np;
// Precalculate the offset for each sub-sub-domain
openfpm::vector<agg_arr<openfpm::math::pow(vector::dims,kernel::np),typename vector::stype>> offsets;
calculate_the_offsets(offsets,sz);
// point position
typename vector::stype xp[vector::dims];
......@@ -546,30 +296,24 @@ public:
typename vector::stype x[vector::dims][kernel::np];
typename vector::stype a[vector::dims][kernel::np];
// grid_cpu<vector::dims,aggregate<typename vector::stype>> a_int(sz);
// a_int.setMemory();
typename vector::stype a_int[openfpm::math::pow(vector::dims,kernel::np)];
size_t sz[vector::dims];
for (size_t i = 0 ; i < vector::dims ; i++)
sz[i] = kernel::np;
grid_cpu<vector::dims,aggregate<typename vector::stype>> a_int(sz);