diff --git a/src/.deps/pdata-VCluster.Po b/src/.deps/pdata-VCluster.Po index 0b7a89114d691c86732a60ffab0794e4a5452e1c..4de2a75bfeaff4058c22d98cee59d48326111c60 100644 --- a/src/.deps/pdata-VCluster.Po +++ b/src/.deps/pdata-VCluster.Po @@ -942,16 +942,18 @@ pdata-VCluster.o: ../../OpenFPM_vcluster/src/VCluster.cpp \ ../../OpenFPM_data/src/memory.hpp ../../OpenFPM_data/src/config.h \ ../../OpenFPM_data/src/memory.hpp ../../OpenFPM_data/src/meta_copy.hpp \ ../../OpenFPM_data/src/Memleak_check.hpp \ - ../../OpenFPM_data/src/Grid/grid.hpp /usr/include/boost/shared_array.hpp \ + ../../OpenFPM_data/src/for_each_ref.hpp \ + ../../OpenFPM_data/src/Grid/grid_sm.hpp \ + /usr/include/boost/shared_array.hpp \ /usr/include/boost/smart_ptr/shared_array.hpp \ ../../OpenFPM_data/src/Space/Shape/Box.hpp \ ../../OpenFPM_data/src/Space/Shape/Sphere.hpp \ ../../OpenFPM_data/src/base_type.hpp \ ../../OpenFPM_data/src/Space/Shape/Point.hpp \ - ../../OpenFPM_data/src/Space/Shape/Point.hpp \ ../../OpenFPM_data/src/Grid/grid_key.hpp \ ../../OpenFPM_data/src/Grid/comb.hpp \ ../../OpenFPM_data/src/Grid/grid_key_expression.hpp \ + ../../OpenFPM_data/src/Space/Shape/Point.hpp \ ../../OpenFPM_data/src/Grid/grid_key.hpp \ ../../OpenFPM_data/src/Grid/Encap.hpp \ ../../OpenFPM_data/src/memory_array.hpp \ @@ -3029,7 +3031,9 @@ config.h: ../../OpenFPM_data/src/Memleak_check.hpp: -../../OpenFPM_data/src/Grid/grid.hpp: +../../OpenFPM_data/src/for_each_ref.hpp: + +../../OpenFPM_data/src/Grid/grid_sm.hpp: /usr/include/boost/shared_array.hpp: @@ -3043,14 +3047,14 @@ config.h: ../../OpenFPM_data/src/Space/Shape/Point.hpp: -../../OpenFPM_data/src/Space/Shape/Point.hpp: - ../../OpenFPM_data/src/Grid/grid_key.hpp: ../../OpenFPM_data/src/Grid/comb.hpp: ../../OpenFPM_data/src/Grid/grid_key_expression.hpp: +../../OpenFPM_data/src/Space/Shape/Point.hpp: + ../../OpenFPM_data/src/Grid/grid_key.hpp: ../../OpenFPM_data/src/Grid/Encap.hpp: diff --git a/src/.deps/pdata-main.Po b/src/.deps/pdata-main.Po index 2c985f560a77c072111128ece0c76e250458edea..a26f8d32f96a7468676b81c0088ced7937e77f15 100644 --- a/src/.deps/pdata-main.Po +++ b/src/.deps/pdata-main.Po @@ -907,16 +907,18 @@ pdata-main.o: main.cpp /usr/include/stdc-predef.h \ /usr/include/c++/4.8.3/bits/stl_tree.h \ /usr/include/c++/4.8.3/bits/stl_map.h \ /usr/include/c++/4.8.3/bits/stl_multimap.h \ - ../../OpenFPM_data/src/Grid/grid.hpp /usr/include/boost/shared_array.hpp \ + ../../OpenFPM_data/src/for_each_ref.hpp \ + ../../OpenFPM_data/src/Grid/grid_sm.hpp \ + /usr/include/boost/shared_array.hpp \ /usr/include/boost/smart_ptr/shared_array.hpp \ ../../OpenFPM_data/src/Space/Shape/Box.hpp \ ../../OpenFPM_data/src/Space/Shape/Sphere.hpp \ ../../OpenFPM_data/src/base_type.hpp \ ../../OpenFPM_data/src/Space/Shape/Point.hpp \ - ../../OpenFPM_data/src/Space/Shape/Point.hpp \ ../../OpenFPM_data/src/Grid/grid_key.hpp \ ../../OpenFPM_data/src/Grid/comb.hpp \ ../../OpenFPM_data/src/Grid/grid_key_expression.hpp \ + ../../OpenFPM_data/src/Space/Shape/Point.hpp \ ../../OpenFPM_data/src/Grid/grid_key.hpp \ ../../OpenFPM_data/src/Grid/Encap.hpp \ ../../OpenFPM_data/src/memory_array.hpp \ @@ -957,7 +959,7 @@ pdata-main.o: main.cpp /usr/include/stdc-predef.h \ /home/i-bird/MPI/include/openmpi/ompi/mpi/cxx/file_inln.h \ ../../OpenFPM_data/src/Vector/map_vector_std.hpp \ ../../OpenFPM_data/src/Graph/map_graph.hpp \ - ../../OpenFPM_data/src/Grid/grid.hpp \ + ../../OpenFPM_data/src/Grid/grid_sm.hpp \ ../../OpenFPM_data/src/Space/Shape/HyperCube.hpp \ ../../OpenFPM_data/src/mathutil.hpp \ /usr/include/boost/test/included/unit_test.hpp \ @@ -3300,7 +3302,9 @@ config.h: /usr/include/c++/4.8.3/bits/stl_multimap.h: -../../OpenFPM_data/src/Grid/grid.hpp: +../../OpenFPM_data/src/for_each_ref.hpp: + +../../OpenFPM_data/src/Grid/grid_sm.hpp: /usr/include/boost/shared_array.hpp: @@ -3314,14 +3318,14 @@ config.h: ../../OpenFPM_data/src/Space/Shape/Point.hpp: -../../OpenFPM_data/src/Space/Shape/Point.hpp: - ../../OpenFPM_data/src/Grid/grid_key.hpp: ../../OpenFPM_data/src/Grid/comb.hpp: ../../OpenFPM_data/src/Grid/grid_key_expression.hpp: +../../OpenFPM_data/src/Space/Shape/Point.hpp: + ../../OpenFPM_data/src/Grid/grid_key.hpp: ../../OpenFPM_data/src/Grid/Encap.hpp: @@ -3404,7 +3408,7 @@ config.h: ../../OpenFPM_data/src/Graph/map_graph.hpp: -../../OpenFPM_data/src/Grid/grid.hpp: +../../OpenFPM_data/src/Grid/grid_sm.hpp: ../../OpenFPM_data/src/Space/Shape/HyperCube.hpp: diff --git a/src/Decomposition/CartDecomposition.hpp b/src/Decomposition/CartDecomposition.hpp index ced94e759ec428af0544a2544afa7a0af9570924..91c187d82b184ae0021fec176c65ef17a3533374 100644 --- a/src/Decomposition/CartDecomposition.hpp +++ b/src/Decomposition/CartDecomposition.hpp @@ -167,7 +167,7 @@ private: { // Create a grid where each point is a space - grid<3,void> g(div); + grid_sm<dim,void> g(div); // create a grid_key_dx iterator diff --git a/src/Decomposition/CartDecomposition_unit_test.hpp b/src/Decomposition/CartDecomposition_unit_test.hpp index 226f526ac213df22d48c8c73a94d04f3b65b6af8..668adc11eb02970ad576a72d473e5614a1601805 100644 --- a/src/Decomposition/CartDecomposition_unit_test.hpp +++ b/src/Decomposition/CartDecomposition_unit_test.hpp @@ -29,7 +29,7 @@ BOOST_AUTO_TEST_CASE( CartDecomposition_test_use) // Calculate the number of sub-domain on each dimension for (int i = 0 ; i < 3 ; i++) - {div[i] = round_big_2(pow(n_sub,1.0/3));} + {div[i] = openfpm::math::round_big_2(pow(n_sub,1.0/3));} // Decompose dec.setParameters(div,box); diff --git a/src/Decomposition/ORB.hpp b/src/Decomposition/ORB.hpp index 7d40dfe534d8887f60a7475c8dd329b22419a21c..79c39307e42d18953985b86074a3cb837b8094fa 100644 --- a/src/Decomposition/ORB.hpp +++ b/src/Decomposition/ORB.hpp @@ -9,7 +9,7 @@ #define ORB_HPP_ #include "data_type/scalar.hpp" - +#include "mathutil.hpp" /*! \brief this class is a functor for "for_each" algorithm * @@ -270,7 +270,7 @@ public: dim_div = 0; - n_sub = round_big_2(n_sub); + n_sub = openfpm::math::round_big_2(n_sub); size_t nsub = log2(n_sub); // number of center or mass needed diff --git a/src/Graph/CartesianGraphFactory.hpp b/src/Graph/CartesianGraphFactory.hpp index 610c497614eadf068168cb99b72ceddf56b33cf3..f667d06aad14a68d5c3c276c073c7cabd82a5def 100644 --- a/src/Graph/CartesianGraphFactory.hpp +++ b/src/Graph/CartesianGraphFactory.hpp @@ -10,7 +10,7 @@ #include "Vector/map_vector.hpp" #include "Graph/map_graph.hpp" -#include "Grid/grid.hpp" +#include "Grid/grid_sm.hpp" #include "Space/Shape/Box.hpp" #include "Space/Shape/HyperCube.hpp" @@ -99,7 +99,7 @@ public: // Construct a grid info - grid<dim,void> g(sz); + grid_sm<dim,void> g(sz); // Create a graph with the number of vertices equal to the number of // grid point @@ -209,7 +209,7 @@ public: // Construct a grid info - grid<dim,void> g(sz); + grid_sm<dim,void> g(sz); // Create a graph with the number of vertices equal to the number of // grid point diff --git a/src/Grid/grid_dist_id.hpp b/src/Grid/grid_dist_id.hpp index eb33fffedb1495ac46bd8046a2218b0e6da2bfd5..899a268e4c1c795ec866106263f3ea1f40e8f9b0 100644 --- a/src/Grid/grid_dist_id.hpp +++ b/src/Grid/grid_dist_id.hpp @@ -114,7 +114,7 @@ public: // each dimension size_t div[dim]; for (int i = 0 ; i < dim ; i++) - {div[i] = round_big_2(pow(n_sub,1.0/dim));} + {div[i] = openfpm::math::round_big_2(pow(n_sub,1.0/dim));} // Create the sub-domains dec.setParameters(div); @@ -139,7 +139,7 @@ public: // each dimension size_t div[dim]; for (int i = 0 ; i < dim ; i++) - {div[i] = round_big_2(pow(n_sub,1.0/dim));} + {div[i] = openfpm::math::round_big_2(pow(n_sub,1.0/dim));} // Box Box<dim,size_t> b(g_sz); diff --git a/src/Vector/vector_dist.hpp b/src/Vector/vector_dist.hpp index e829f733ab919391822b9f3cbe919bde7eb68ba3..c68da5ab26981a37797a2c8947f41e2bd91a69f2 100644 --- a/src/Vector/vector_dist.hpp +++ b/src/Vector/vector_dist.hpp @@ -29,10 +29,10 @@ private: //! Space Decomposition Decomposition dec; - // Particle position vector for each subdomain the last one is the unassigned particles vector + // Particle position vector for each sub-domain the last one is the unassigned particles vector Vcluster_object_array<openfpm::vector<point>> v_pos; - // Particle properties vector for each subdomain the last one is the unassigned particles vector + // Particle properties vector for each sub-domain the last one is the unassigned particles vector Vcluster_object_array<openfpm::vector<prop>> v_prp; // Virtual cluster @@ -68,7 +68,7 @@ public: // each dimension size_t div[point::dims]; for (int i = 0 ; i < point::dims ; i++) - {div[i] = round_big_2(pow(n_sub,1.0/point::dims));} + {div[i] = openfpm::math::round_big_2(pow(n_sub,1.0/point::dims));} // Create the sub-domains dec.setParameters(div,box); @@ -113,7 +113,7 @@ public: auto it = v_pos.get(up_v).getIterator(); - // Label all the particles it the processor id where they should go + // Label all the particles with the processor id where they should go while (it.isNext()) { auto key = it.get(); diff --git a/src/dec_optimizer.hpp b/src/dec_optimizer.hpp index baf34e0b5d7e5ec53aa6aa89468be7c644f21d0d..ea7371baff9aa3b87404f63a06870fe814dd50a0 100644 --- a/src/dec_optimizer.hpp +++ b/src/dec_optimizer.hpp @@ -101,7 +101,7 @@ class dec_optimizer { // create a grid header for helping - grid<dim,void> gh; + grid_sm<dim,void> gh; private: diff --git a/src/pdata b/src/pdata index 5b243341f6bca6893f937c36b081786128267c83..cd50ab8219083878b6f8ac263d174d518479482f 100755 Binary files a/src/pdata and b/src/pdata differ diff --git a/src/pdata-HeapMemory.o b/src/pdata-HeapMemory.o index e82ad42386b9a4fff7a8a1e8e7606e0492104205..4f8b9f0f284e1342ef713326eb61f7b20fe1673d 100644 Binary files a/src/pdata-HeapMemory.o and b/src/pdata-HeapMemory.o differ diff --git a/src/pdata-VCluster.o b/src/pdata-VCluster.o index 871a340059b570f877a4cd6438483240daf93c18..661ca37a97d0a609e1373161db93bb2740c3269a 100644 Binary files a/src/pdata-VCluster.o and b/src/pdata-VCluster.o differ diff --git a/src/pdata-main.o b/src/pdata-main.o index 4247308757311baa92f0f048de63cacbcda81b5b..c8440206ee929dba1afd5d1422f173c7ed2b3fc0 100644 Binary files a/src/pdata-main.o and b/src/pdata-main.o differ