diff --git a/build_pdata.sh b/build_pdata.sh new file mode 100644 index 0000000000000000000000000000000000000000..77b1fd6345766961a77619ead167fcea385576fb --- /dev/null +++ b/build_pdata.sh @@ -0,0 +1,118 @@ +#! /bin/bash + +# Make a directory in /tmp/OpenFPM_data + +echo "Directory: $1" +echo "Machine: $2" + +mkdir /tmp/openfpm_pdata +mv * .[^.]* /tmp/openfpm_pdata +mv /tmp/openfpm_pdata OpenFPM_pdata + +mkdir OpenFPM_pdata/src/config + +git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_vcluster.git OpenFPM_vcluster +git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_devices.git OpenFPM_devices +git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_data.git OpenFPM_data +cd OpenFPM_pdata +git checkout develop +cd .. + +cd "$1/OpenFPM_pdata" + +if [ "$2" == "gin" ] +then + echo "Compiling on gin\n" + module load gcc/4.9.2 + module load openmpi/1.8.1 +elif [ "$2" == "wetcluster" ] +then + echo "Compiling on wetcluster" + +## produce the module path + + export MODULEPATH="/sw/apps/modules/modulefiles:$MODULEPATH" + + script="module load gcc/4.9.2\n +module load openmpi/1.8.1\n +module load boost/1.54.0\n +compile_options='--with-boost=/sw/apps/boost/1.54.0/'\n +\n +sh ./autogen.sh\n +sh ./configure \"\$compile_options\" CXX=mpic++\n +make\n +if [ \"\$?\" = "0" ]; then exit 1 ; fi\n +exit(0)\n" + + echo $script | sed -r 's/\\n/\n/g' > compile_script + + bsub -o output_compile.%J -K -n 1 -J compile sh ./compile_script + +## Run on the cluster + bsub -o output_run2.%J -K -n 2 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 2 ./src/pdata" + if [ $? -ne 0 ]; then exit 1 ; fi + bsub -o output_run3.%J -K -n 3 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 3 ./src/pdata" + if [ $? -ne 0 ]; then exit 1 ; fi + bsub -o output_run4.%J -K -n 4 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 4 ./src/pdata" + if [ $? -ne 0 ]; then exit 1 ; fi + bsub -o output_run5.%J -K -n 5 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 5 ./src/pdata" + if [ $? -ne 0 ]; then exit 1 ; fi + bsub -o output_run6.%J -K -n 6 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 6 ./src/pdata" + if [ $? -ne 0 ]; then exit 1 ; fi + bsub -o output_run6.%J -K -n 7 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 7 ./src/pdata" + if [ $? -ne 0 ]; then exit 1 ; fi + bsub -o output_run6.%J -K -n 8 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 8 ./src/pdata" + if [ $? -ne 0 ]; then exit 1 ; fi + bsub -o output_run6.%J -K -n 9 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 9 ./src/pdata" + if [ $? -ne 0 ]; then exit 1 ; fi + bsub -o output_run6.%J -K -n 10 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 10 ./src/pdata" + if [ $? -ne 0 ]; then exit 1 ; fi + bsub -o output_run6.%J -K -n 11 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 11 ./src/pdata" + if [ $? -ne 0 ]; then exit 1 ; fi + bsub -o output_run12.%J -K -n 12 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 12 ./src/vcluster" + if [ $? -ne 0 ]; then exit 1 ; fi +# bsub -o output_run32.%J -K -n 32 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 32 ./src/vcluster" +# if [ $? -ne 0 ]; then exit 1 ; fi +# bsub -o output_run32.%J -K -n 64 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 64 ./src/vcluster" +# if [ $? -ne 0 ]; then exit 1 ; fi +# bsub -o output_run32.%J -K -n 128 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 128 ./src/vcluster" +# if [ $? -ne 0 ]; then exit 1 ; fi +elif [ "$2" == "taurus" ] +then + echo "Compiling on taurus" + + echo "$PATH" + module load gcc/4.8.2 + module load boost/1.55.0-gnu4.8 + module load openmpi/1.8.7 + module unload bullxmpi + + sh ./autogen.sh + sh ./configure --enable-verbose CXX=mpic++ + make + if [ $? -ne 0 ]; then exit 1 ; fi + +# salloc --nodes=1 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 16 src/vcluster" +# if [ $? -ne 0 ]; then exit 1 ; fi +# salloc --nodes=2 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 32 src/vcluster" +# if [ $? -ne 0 ]; then exit 1 ; fi +# salloc --nodes=4 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 64 src/vcluster" +# if [ $? -ne 0 ]; then exit 1 ; fi +# salloc --nodes=8 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 128 src/vcluster" +# if [ $? -ne 0 ]; then exit 1 ; fi +# salloc --nodes=16 --ntasks-per-node=16 --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 256 src/vcluster" +# if [ $? -ne 0 ]; then exit 1 ; fi + +else + echo "Compiling general" + sh ./autogen.sh + sh ./configure CXX=mpic++ + make + + mpirun -np 2 ./src/pdata + mpirun -np 3 ./src/pdata + mpirun -np 4 ./src/pdata +fi + + +