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argupta
openfpm_pdata
Commits
f2d7c8d3
Commit
f2d7c8d3
authored
Nov 10, 2017
by
incardon
Browse files
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Browse Files
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Plain Diff
Fixing DLB for multiphase
parent
cfbe9fff
Changes
10
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Showing
10 changed files
with
71 additions
and
40 deletions
+71
-40
images/vector.cpp
images/vector.cpp
+1
-1
src/Decomposition/CartDecomposition.hpp
src/Decomposition/CartDecomposition.hpp
+20
-5
src/Decomposition/Distribution/ParMetisDistribution.hpp
src/Decomposition/Distribution/ParMetisDistribution.hpp
+2
-0
src/Decomposition/Distribution/parmetis_util.hpp
src/Decomposition/Distribution/parmetis_util.hpp
+7
-4
src/Vector/vector_dist.hpp
src/Vector/vector_dist.hpp
+8
-8
src/Vector/vector_dist_HDF5_chckpnt_restart_test.hpp
src/Vector/vector_dist_HDF5_chckpnt_restart_test.hpp
+3
-3
src/Vector/vector_dist_cell_list_tests.hpp
src/Vector/vector_dist_cell_list_tests.hpp
+5
-5
src/Vector/vector_dist_comm.hpp
src/Vector/vector_dist_comm.hpp
+11
-5
src/Vector/vector_dist_dlb_test.hpp
src/Vector/vector_dist_dlb_test.hpp
+6
-1
src/Vector/vector_dist_unit_test.hpp
src/Vector/vector_dist_unit_test.hpp
+8
-8
No files found.
images/vector.cpp
View file @
f2d7c8d3
...
...
@@ -58,7 +58,7 @@ int main(int argc, char* argv[])
size_t
bc
[
2
]
=
{
PERIODIC
,
PERIODIC
};
Ghost
<
2
,
float
>
g
(
0.01
);
vector_dist
<
2
,
float
,
Particle
<
float
>
,
CartDecomposition
<
2
,
float
>
>
vd
(
4096
,
domain
,
bc
,
g
);
vector_dist
<
2
,
float
,
Particle
<
float
>
>
vd
(
4096
,
domain
,
bc
,
g
);
auto
it
=
vd
.
getIterator
();
...
...
src/Decomposition/CartDecomposition.hpp
View file @
f2d7c8d3
...
...
@@ -798,6 +798,9 @@ public:
cart
.
box_nn_processor
=
box_nn_processor
;
cart
.
fine_s
=
fine_s
;
cart
.
gr
=
gr
;
cart
.
gr_dist
=
gr_dist
;
cart
.
dist
=
dist
;
cart
.
commCostSet
=
commCostSet
;
cart
.
cd
=
cd
;
cart
.
domain
=
domain
;
for
(
size_t
i
=
0
;
i
<
dim
;
i
++
)
...
...
@@ -830,11 +833,17 @@ public:
box_nn_processor
=
cart
.
box_nn_processor
;
fine_s
=
cart
.
fine_s
;
gr
=
cart
.
gr
;
gr_dist
=
cart
.
gr_dist
;
dist
=
cart
.
dist
;
commCostSet
=
cart
.
commCostSet
;
cd
=
cart
.
cd
;
domain
=
cart
.
domain
;
for
(
size_t
i
=
0
;
i
<
dim
;
i
++
)
{
spacing
[
i
]
=
cart
.
spacing
[
i
];};
{
spacing
[
i
]
=
cart
.
spacing
[
i
];
magn
[
i
]
=
cart
.
magn
[
i
];
};
ghost
=
cart
.
ghost
;
...
...
@@ -863,10 +872,16 @@ public:
box_nn_processor
.
swap
(
cart
.
box_nn_processor
);
fine_s
.
swap
(
cart
.
fine_s
);
gr
=
cart
.
gr
;
gr_dist
=
cart
.
gr_dist
;
dist
=
cart
.
dist
;
commCostSet
=
cart
.
commCostSet
;
cd
=
cart
.
cd
;
domain
=
cart
.
domain
;
for
(
size_t
i
=
0
;
i
<
dim
;
i
++
)
{
spacing
[
i
]
=
cart
.
spacing
[
i
];};
{
spacing
[
i
]
=
cart
.
spacing
[
i
];
magn
[
i
]
=
cart
.
magn
[
i
];
};
ghost
=
cart
.
ghost
;
...
...
@@ -1096,7 +1111,7 @@ public:
reset
();
if
(
commCostSet
==
false
)
computeCommunicationAndMigrationCosts
(
1
);
{
computeCommunicationAndMigrationCosts
(
1
);}
dist
.
decompose
();
...
...
@@ -1118,7 +1133,7 @@ public:
reset
();
if
(
commCostSet
==
false
)
computeCommunicationAndMigrationCosts
(
ts
);
{
computeCommunicationAndMigrationCosts
(
ts
);}
dist
.
refine
();
...
...
@@ -1140,7 +1155,7 @@ public:
reset
();
if
(
commCostSet
==
false
)
computeCommunicationAndMigrationCosts
(
ts
);
{
computeCommunicationAndMigrationCosts
(
ts
);}
dist
.
redecompose
();
...
...
src/Decomposition/Distribution/ParMetisDistribution.hpp
View file @
f2d7c8d3
...
...
@@ -638,6 +638,7 @@ public:
verticesGotWeights
=
dist
.
verticesGotWeights
;
sub_sub_owner
=
dist
.
sub_sub_owner
;
m2g
=
dist
.
m2g
;
parmetis_graph
=
dist
.
parmetis_graph
;
return
*
this
;
}
...
...
@@ -655,6 +656,7 @@ public:
verticesGotWeights
=
dist
.
verticesGotWeights
;
sub_sub_owner
.
swap
(
dist
.
sub_sub_owner
);
m2g
.
swap
(
dist
.
m2g
);
parmetis_graph
=
dist
.
parmetis_graph
;
return
*
this
;
}
...
...
src/Decomposition/Distribution/parmetis_util.hpp
View file @
f2d7c8d3
...
...
@@ -526,10 +526,11 @@ public:
*/
const
Parmetis
<
Graph
>
&
operator
=
(
const
Parmetis
<
Graph
>
&
pm
)
{
comm
=
pm
.
comm
;
v_cl
=
pm
.
v_cl
;
MPI_Comm_dup
(
pm
.
comm
,
&
comm
);
p_id
=
pm
.
p_id
;
nc
=
pm
.
nc
;
n_dec
=
pm
.
n_dec
;
dist_tol
=
pm
.
dist_tol
;
setDefaultParameters
(
pm
.
Mg
.
wgtflag
[
0
]
==
3
);
...
...
@@ -545,10 +546,12 @@ public:
*/
const
Parmetis
<
Graph
>
&
operator
=
(
Parmetis
<
Graph
>
&&
pm
)
{
comm
=
pm
.
comm
;
v_cl
=
pm
.
v_cl
;
// TODO Move into VCluster
MPI_Comm_dup
(
pm
.
comm
,
&
comm
)
;
p_id
=
pm
.
p_id
;
nc
=
pm
.
nc
;
n_dec
=
pm
.
n_dec
;
dist_tol
=
pm
.
dist_tol
;
setDefaultParameters
(
pm
.
Mg
.
wgtflag
[
0
]
==
3
);
...
...
src/Vector/vector_dist.hpp
View file @
f2d7c8d3
...
...
@@ -140,7 +140,7 @@ template<unsigned int dim,
template
<
typename
>
class
layout_base
=
memory_traits_lin
,
typename
Decomposition
=
CartDecomposition
<
dim
,
St
>
,
typename
Memory
=
HeapMemory
>
class
vector_dist
:
public
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
class
vector_dist
:
public
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
{
public:
...
...
@@ -161,7 +161,7 @@ private:
//! Particle properties vector, (It has 2 elements) the first has real particles assigned to a processor
//! the second element contain unassigned particles
openfpm
::
vector
<
prop
,
Memory
>
v_prp
;
openfpm
::
vector
<
prop
,
Memory
,
layout
,
layout_base
>
v_prp
;
//! Virtual cluster
Vcluster
&
v_cl
;
...
...
@@ -255,7 +255,7 @@ public:
*/
vector_dist
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
&
operator
=
(
const
vector_dist
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
&
v
)
{
static_cast
<
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
*>
(
this
)
->
operator
=
(
static_cast
<
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>>
(
v
));
static_cast
<
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
*>
(
this
)
->
operator
=
(
static_cast
<
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>>
(
v
));
g_m
=
v
.
g_m
;
v_pos
=
v
.
v_pos
;
...
...
@@ -279,7 +279,7 @@ public:
*/
vector_dist
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
&
operator
=
(
vector_dist
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
&&
v
)
{
static_cast
<
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
*>
(
this
)
->
operator
=
(
static_cast
<
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
>
(
v
));
static_cast
<
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
*>
(
this
)
->
operator
=
(
static_cast
<
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
>
(
v
));
g_m
=
v
.
g_m
;
v_pos
.
swap
(
v
.
v_pos
);
...
...
@@ -301,7 +301,7 @@ public:
*
*/
vector_dist
(
const
vector_dist
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
&
v
)
:
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
(
v
.
getDecomposition
()),
v_cl
(
v
.
v_cl
)
SE_CLASS3_VDIST_CONSTRUCTOR
:
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
(
v
.
getDecomposition
()),
v_cl
(
v
.
v_cl
)
SE_CLASS3_VDIST_CONSTRUCTOR
{
#ifdef SE_CLASS2
check_new
(
this
,
8
,
VECTOR_DIST_EVENT
,
4
);
...
...
@@ -336,7 +336,7 @@ public:
*
*/
vector_dist
(
const
Decomposition
&
dec
,
size_t
np
)
:
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
(
dec
),
v_cl
(
create_vcluster
())
SE_CLASS3_VDIST_CONSTRUCTOR
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
(
dec
),
v_cl
(
create_vcluster
())
SE_CLASS3_VDIST_CONSTRUCTOR
{
#ifdef SE_CLASS2
check_new
(
this
,
8
,
VECTOR_DIST_EVENT
,
4
);
...
...
@@ -1620,7 +1620,7 @@ public:
*/
inline
Decomposition
&
getDecomposition
()
{
return
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>::
getDecomposition
();
return
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>::
getDecomposition
();
}
/*! \brief Get the decomposition
...
...
@@ -1630,7 +1630,7 @@ public:
*/
inline
const
Decomposition
&
getDecomposition
()
const
{
return
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>::
getDecomposition
();
return
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>::
getDecomposition
();
}
/*! \brief It move all the particles that does not belong to the local processor to the respective processor
...
...
src/Vector/vector_dist_HDF5_chckpnt_restart_test.hpp
View file @
f2d7c8d3
...
...
@@ -46,7 +46,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_hdf5_save_test )
// ghost
Ghost
<
dim
,
float
>
ghost
(
1.0
/
(
Ng
-
2
));
vector_dist
<
dim
,
float
,
aggregate
<
float
[
dim
]
>
,
CartDecomposition
<
dim
,
float
>
>
vd
(
0
,
box
,
bc
,
ghost
);
vector_dist
<
dim
,
float
,
aggregate
<
float
[
dim
]
>
>
vd
(
0
,
box
,
bc
,
ghost
);
// Put particles
...
...
@@ -85,7 +85,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_hdf5_save_test )
// Save the vector
vd
.
save
(
"vector_dist.h5"
);
vector_dist
<
dim
,
float
,
aggregate
<
float
[
dim
]
>
,
CartDecomposition
<
dim
,
float
>
>
vd2
(
0
,
box
,
bc
,
ghost
);
vector_dist
<
dim
,
float
,
aggregate
<
float
[
dim
]
>
>
vd2
(
0
,
box
,
bc
,
ghost
);
vd2
.
load
(
"vector_dist.h5"
);
...
...
@@ -143,7 +143,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_hdf5_load_test )
// ghost
Ghost
<
dim
,
float
>
ghost
(
1.0
/
(
Ng
-
2
));
vector_dist
<
dim
,
float
,
aggregate
<
float
[
dim
]
>
,
CartDecomposition
<
dim
,
float
>
>
vd
(
0
,
box
,
bc
,
ghost
);
vector_dist
<
dim
,
float
,
aggregate
<
float
[
dim
]
>
>
vd
(
0
,
box
,
bc
,
ghost
);
// Load the vector
vd
.
load
(
"test_data/vector_dist_24.h5"
);
...
...
src/Vector/vector_dist_cell_list_tests.hpp
View file @
f2d7c8d3
...
...
@@ -47,7 +47,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_reorder_2d_test )
// Boundary conditions
size_t
bc
[
2
]
=
{
NON_PERIODIC
,
NON_PERIODIC
};
vector_dist
<
2
,
float
,
Point_test
<
float
>
,
CartDecomposition
<
2
,
float
>
>
vd
(
k
,
box
,
bc
,
Ghost
<
2
,
float
>
(
0.01
));
vector_dist
<
2
,
float
,
Point_test
<
float
>
>
vd
(
k
,
box
,
bc
,
Ghost
<
2
,
float
>
(
0.01
));
auto
it
=
vd
.
getIterator
();
...
...
@@ -143,9 +143,9 @@ BOOST_AUTO_TEST_CASE( vector_dist_cl_random_vs_hilb_forces_test )
for
(
size_t
i
=
0
;
i
<
dim
;
i
++
)
bc
[
i
]
=
PERIODIC
;
vector_dist
<
dim
,
float
,
aggregate
<
float
[
dim
]
>
,
CartDecomposition
<
dim
,
float
>
>
vd
(
k_int
,
box
,
bc
,
Ghost
<
dim
,
float
>
(
ghost_part
));
vector_dist
<
dim
,
float
,
aggregate
<
float
[
dim
]
>
>
vd
(
k_int
,
box
,
bc
,
Ghost
<
dim
,
float
>
(
ghost_part
));
vector_dist
<
dim
,
float
,
aggregate
<
float
[
dim
]
>
,
CartDecomposition
<
dim
,
float
>
>
vd2
(
k_int
,
box
,
bc
,
Ghost
<
dim
,
float
>
(
ghost_part
));
vector_dist
<
dim
,
float
,
aggregate
<
float
[
dim
]
>
>
vd2
(
k_int
,
box
,
bc
,
Ghost
<
dim
,
float
>
(
ghost_part
));
// Initialize dist vectors
vd_initialize_double
<
dim
>
(
vd
,
vd2
,
v_cl
,
k_int
);
...
...
@@ -180,7 +180,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_cl_random_vs_hilb_forces_test )
vect_dist_key_dx
key
=
it_v2
.
get
();
for
(
size_t
i
=
0
;
i
<
dim
;
i
++
)
avg
.
get
(
i
)
+=
fabs
(
vd
.
getProp
<
0
>
(
key
)[
i
]);
{
avg
.
get
(
i
)
+=
fabs
(
vd
.
getProp
<
0
>
(
key
)[
i
]);}
++
count
;
++
it_v2
;
...
...
@@ -267,7 +267,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_cl_random_vs_reorder_forces_test )
for
(
size_t
i
=
0
;
i
<
dim
;
i
++
)
bc
[
i
]
=
PERIODIC
;
vector_dist
<
dim
,
float
,
aggregate
<
float
[
dim
],
float
[
dim
]
>
,
CartDecomposition
<
dim
,
float
>
>
vd
(
k_int
,
box
,
bc
,
Ghost
<
dim
,
float
>
(
ghost_part
));
vector_dist
<
dim
,
float
,
aggregate
<
float
[
dim
],
float
[
dim
]
>
>
vd
(
k_int
,
box
,
bc
,
Ghost
<
dim
,
float
>
(
ghost_part
));
// Initialize vd
vd_initialize
<
dim
,
decltype
(
vd
)
>
(
vd
,
v_cl
,
k_int
);
...
...
src/Vector/vector_dist_comm.hpp
View file @
f2d7c8d3
...
...
@@ -42,7 +42,13 @@ inline static size_t compute_options(size_t opt)
*
*/
template
<
unsigned
int
dim
,
typename
St
,
typename
prop
,
typename
Decomposition
=
CartDecomposition
<
dim
,
St
>,
typename
Memory
=
HeapMemory
>
template
<
unsigned
int
dim
,
typename
St
,
typename
prop
,
typename
layout
,
template
<
typename
>
class
layout_base
,
typename
Decomposition
=
CartDecomposition
<
dim
,
St
>,
typename
Memory
=
HeapMemory
>
class
vector_dist_comm
{
//! Number of units for each sub-domain
...
...
@@ -784,7 +790,7 @@ class vector_dist_comm
static
void
*
message_alloc_map
(
size_t
msg_i
,
size_t
total_msg
,
size_t
total_p
,
size_t
i
,
size_t
ri
,
void
*
ptr
)
{
// cast the pointer
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
*
vd
=
static_cast
<
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
*>
(
ptr
);
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
*
vd
=
static_cast
<
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
*>
(
ptr
);
vd
->
recv_mem_gm
.
resize
(
vd
->
v_cl
.
getProcessingUnits
());
vd
->
recv_mem_gm
.
get
(
i
).
resize
(
msg_i
);
...
...
@@ -799,7 +805,7 @@ public:
* \param v vector to copy
*
*/
vector_dist_comm
(
const
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
&
v
)
vector_dist_comm
(
const
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
&
v
)
:
v_cl
(
create_vcluster
()),
dec
(
create_vcluster
()),
lg_m
(
0
)
{
this
->
operator
=
(
v
);
...
...
@@ -1166,7 +1172,7 @@ public:
* \return iteself
*
*/
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
&
operator
=
(
const
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
&
vc
)
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
&
operator
=
(
const
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
&
vc
)
{
dec
=
vc
.
dec
;
...
...
@@ -1180,7 +1186,7 @@ public:
* \return itself
*
*/
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
&
operator
=
(
vector_dist_comm
<
dim
,
St
,
prop
,
Decomposition
,
Memory
>
&&
vc
)
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
&
operator
=
(
vector_dist_comm
<
dim
,
St
,
prop
,
layout
,
layout_base
,
Decomposition
,
Memory
>
&&
vc
)
{
dec
=
vc
.
dec
;
...
...
src/Vector/vector_dist_dlb_test.hpp
View file @
f2d7c8d3
...
...
@@ -332,7 +332,12 @@ BOOST_AUTO_TEST_CASE( vector_dist_dlb_multi_phase_test_part )
BOOST_AUTO_TEST_CASE
(
vector_dist_dlb_metis_test_part
)
{
test_dlb_vector
<
vector_dist
<
3
,
float
,
aggregate
<
float
>
,
CartDecomposition
<
3
,
float
,
HeapMemory
,
MetisDistribution
<
3
,
float
>>>>
();
test_dlb_vector
<
vector_dist
<
3
,
float
,
aggregate
<
float
>
,
memory_traits_lin
<
aggregate
<
float
>>::
type
,
memory_traits_lin
,
CartDecomposition
<
3
,
float
,
HeapMemory
,
MetisDistribution
<
3
,
float
>>>>
();
}
BOOST_AUTO_TEST_SUITE_END
()
...
...
src/Vector/vector_dist_unit_test.hpp
View file @
f2d7c8d3
...
...
@@ -21,7 +21,7 @@
* \param bc boundary conditions
*
*/
template
<
unsigned
int
dim
>
size_t
total_n_part_lc
(
vector_dist
<
dim
,
float
,
Point_test
<
float
>
,
CartDecomposition
<
dim
,
float
>
>
&
vd
,
size_t
(
&
bc
)[
dim
])
template
<
unsigned
int
dim
,
template
<
typename
>
class
layout
>
size_t
total_n_part_lc
(
vector_dist
<
dim
,
float
,
Point_test
<
float
>
,
typename
layout
<
Point_test
<
float
>>::
type
,
layout
,
CartDecomposition
<
dim
,
float
>
>
&
vd
,
size_t
(
&
bc
)[
dim
])
{
Vcluster
&
v_cl
=
vd
.
getVC
();
auto
it2
=
vd
.
getDomainIterator
();
...
...
@@ -775,7 +775,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_periodic_test_random_walk )
Ghost
<
3
,
float
>
ghost
(
0.01
/
factor
);
// Distributed vector
vector_dist
<
3
,
float
,
Point_test
<
float
>
,
CartDecomposition
<
3
,
float
>
>
vd
(
k
,
box
,
bc
,
ghost
);
vector_dist
<
3
,
float
,
Point_test
<
float
>
>
vd
(
k
,
box
,
bc
,
ghost
);
auto
it
=
vd
.
getIterator
();
...
...
@@ -835,7 +835,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_periodic_map )
Ghost
<
3
,
float
>
ghost
(
0.05
/
factor
);
// Distributed vector
vector_dist
<
3
,
float
,
Point_test
<
float
>
,
CartDecomposition
<
3
,
float
>
>
vd
(
1
,
box
,
bc
,
ghost
);
vector_dist
<
3
,
float
,
Point_test
<
float
>
>
vd
(
1
,
box
,
bc
,
ghost
);
// put particles al 1.0, check that they go to 0.0
...
...
@@ -886,7 +886,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_not_periodic_map )
Ghost
<
3
,
float
>
ghost
(
0.05
/
factor
);
// Distributed vector
vector_dist
<
3
,
float
,
Point_test
<
float
>
,
CartDecomposition
<
3
,
float
>
>
vd
(
1
,
box
,
bc
,
ghost
);
vector_dist
<
3
,
float
,
Point_test
<
float
>
>
vd
(
1
,
box
,
bc
,
ghost
);
// put particles al 1.0, check that they go to 0.0
...
...
@@ -941,7 +941,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_out_of_bound_policy )
Ghost
<
3
,
float
>
ghost
(
0.05
/
factor
);
// Distributed vector
vector_dist
<
3
,
float
,
Point_test
<
float
>
,
CartDecomposition
<
3
,
float
>
>
vd
(
100
,
box
,
bc
,
ghost
);
vector_dist
<
3
,
float
,
Point_test
<
float
>
>
vd
(
100
,
box
,
bc
,
ghost
);
// put particles at out of the boundary, they must be detected and and killed
...
...
@@ -1025,7 +1025,7 @@ void Test_interacting(Box<3,float> & box)
Ghost
<
3
,
float
>
ghost
(
r_cut
);
// Distributed vector
vector_dist
<
3
,
float
,
Point_test
<
float
>
,
CartDecomposition
<
3
,
float
>
>
vd
(
k
,
box
,
bc
,
ghost
);
vector_dist
<
3
,
float
,
Point_test
<
float
>
>
vd
(
k
,
box
,
bc
,
ghost
);
auto
it
=
vd
.
getIterator
();
...
...
@@ -1165,7 +1165,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_grid_iterator )
Ghost
<
3
,
float
>
ghost
(
1.0
/
(
Ng
-
2
));
// Distributed vector
vector_dist
<
3
,
float
,
Point_test
<
float
>
,
CartDecomposition
<
3
,
float
>
>
vd
(
0
,
box
,
bc
,
ghost
);
vector_dist
<
3
,
float
,
Point_test
<
float
>
>
vd
(
0
,
box
,
bc
,
ghost
);
// Put particles on a grid creating a Grid iterator
auto
it
=
vd
.
getGridIterator
(
sz
);
...
...
@@ -1239,7 +1239,7 @@ BOOST_AUTO_TEST_CASE( vector_dist_cell_verlet_test )
Ghost
<
3
,
float
>
ghost
(
third_dist
*
1.1
);
// Distributed vector
vector_dist
<
3
,
float
,
Point_test
<
float
>
,
CartDecomposition
<
3
,
float
>
>
vd
(
0
,
box
,
bc
,
ghost
);
vector_dist
<
3
,
float
,
Point_test
<
float
>
>
vd
(
0
,
box
,
bc
,
ghost
);
// Put particles on a grid creating a Grid iterator
auto
it
=
vd
.
getGridIterator
(
sz
);
...
...
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