#! /bin/bash # Make a directory in /tmp/OpenFPM_data echo "Directory: $1" echo "Machine: $2" mkdir src/config git submodule init if [ $? -ne 0 ]; then echo -e "Configure\033[91;5;1m FAILED \033[0m" exit 1 fi git submodule update if [ $? -ne 0 ]; then echo -e "Configure\033[91;5;1m FAILED \033[0m" exit 1 fi # pull from all the projects cd openfpm_data git pull origin develop if [ $? -ne 0 ]; then echo -e "Configure\033[91;5;1m FAILED \033[0m" exit 1 fi cd .. cd openfpm_devices git pull origin master if [ $? -ne 0 ]; then echo -e "Configure\033[91;5;1m FAILED \033[0m" exit 1 fi cd .. cd openfpm_vcluster git pull origin master if [ $? -ne 0 ]; then echo -e "Configure\033[91;5;1m FAILED \033[0m" exit 1 fi cd .. cd openfpm_io git pull origin master if [ $? -ne 0 ]; then echo -e "Configure\033[91;5;1m FAILED \033[0m" exit 1 fi cd .. cd openfpm_data git checkout develop cd .. if [ "$2" == "gin" ] then echo "Compiling on gin\n" source ~/.bashrc sh ./autogen.sh module load gcc/4.9.2 ./install -s make if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 2 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 3 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 4 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 5 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 6 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 7 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 8 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 9 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 10 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 11 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi mpirun -np 12 ./src/pdata if [ $? -ne 0 ]; then exit 1 ; fi elif [ "$2" == "wetcluster" ] then echo "Compiling on wetcluster" ## produce the module path source ~/.bashrc module load gcc/4.9.2 module load openmpi/1.8.1 module load boost/1.54.0 sh ./autogen.sh ./install -s -c "--with-boost=/sw/apps/boost/1.54.0/ CXX=mpic++" make if [ $? -ne 0 ]; then exit 1 ; fi ## Run on the cluster bsub -o output_run2.%J -K -n 2 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 2 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run3.%J -K -n 3 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 3 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run4.%J -K -n 4 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 4 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run5.%J -K -n 5 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 5 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run6.%J -K -n 6 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 6 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run7.%J -K -n 7 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 7 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run8.%J -K -n 8 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 8 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run9.%J -K -n 9 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 9 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run10.%J -K -n 10 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 10 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run11.%J -K -n 11 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 11 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi bsub -o output_run12.%J -K -n 12 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 12 ./src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi # bsub -o output_run32.%J -K -n 32 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 32 ./src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi # bsub -o output_run32.%J -K -n 64 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 64 ./src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi # bsub -o output_run32.%J -K -n 128 "module load openmpi/1.8.1 ; module load gcc/4.9.2; mpirun -np 128 ./src/vcluster" # if [ $? -ne 0 ]; then exit 1 ; fi elif [ "$2" == "taurus" ] then echo "Compiling on taurus" source /etc/profile echo "$PATH" module load boost/1.56.0-gnu4.9.1 module unload gcc/4.9.1 module load gcc/4.9.3 module load openmpi/1.8.7 module unload bullxmpi module load metis/5.1.0 sh ./autogen.sh ./configure --with-metis=$METIS_ROOT --with-boost=$BOOST_ROOT CXX=mpic++ make if [ $? -ne 0 ]; then exit 1 ; fi salloc --nodes=1 --ntasks-per-node=16 --time=00:10:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 16 src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi salloc --nodes=2 --ntasks-per-node=16 --time=00:10:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 32 src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi salloc --nodes=4 --ntasks-per-node=16 --time=00:10:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 64 src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi salloc --nodes=8 --ntasks-per-node=16 --time=00:10:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 128 src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi salloc --nodes=16 --ntasks-per-node=16 --time=00:10:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 256 src/pdata" if [ $? -ne 0 ]; then exit 1 ; fi else echo "Compiling general" source ~/.bashrc sh ./autogen.sh ./install -s mpirun -np 2 ./src/pdata mpirun -np 3 ./src/pdata mpirun -np 4 ./src/pdata fi