File mode changes and dependency reordering

78470e1c · Aryaman Gupta · 4d89a907 · 78470e1c · 78470e1c · 78470e1c
Commit 78470e1c authored Feb 05, 2019 by Aryaman Gupta
370 changed files
--- a/.gitignore
+++ b/.gitignore
--- a/.gitmodules
+++ b/.gitmodules
--- a/0_vtk_parmetis_distribution_0.vtk
+++ b/0_vtk_parmetis_distribution_0.vtk
--- a/0_vtk_parmetis_distribution_10.vtk
+++ b/0_vtk_parmetis_distribution_10.vtk
--- a/0_vtk_parmetis_distribution_100.vtk
+++ b/0_vtk_parmetis_distribution_100.vtk
--- a/0_vtk_parmetis_distribution_20.vtk
+++ b/0_vtk_parmetis_distribution_20.vtk
--- a/0_vtk_parmetis_distribution_30.vtk
+++ b/0_vtk_parmetis_distribution_30.vtk
--- a/0_vtk_parmetis_distribution_40.vtk
+++ b/0_vtk_parmetis_distribution_40.vtk
--- a/0_vtk_parmetis_distribution_50.vtk
+++ b/0_vtk_parmetis_distribution_50.vtk
--- a/0_vtk_parmetis_distribution_60.vtk
+++ b/0_vtk_parmetis_distribution_60.vtk
--- a/0_vtk_parmetis_distribution_70.vtk
+++ b/0_vtk_parmetis_distribution_70.vtk
--- a/0_vtk_parmetis_distribution_80.vtk
+++ b/0_vtk_parmetis_distribution_80.vtk
--- a/0_vtk_parmetis_distribution_90.vtk
+++ b/0_vtk_parmetis_distribution_90.vtk
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
--- a/ChangeLog
+++ b/ChangeLog
--- a/Common Mistake
+++ b/Common Mistake
--- a/DoxygenLayout.xml
+++ b/DoxygenLayout.xml
--- a/FAQ
+++ b/FAQ
--- a/Jenkins_high_scal_test
+++ b/Jenkins_high_scal_test
--- a/Jenkins_med_scal_test
+++ b/Jenkins_med_scal_test
--- a/Jenkins_sec_OS
+++ b/Jenkins_sec_OS
--- a/Jenkins_sec_compilers
+++ b/Jenkins_sec_compilers
--- a/Jenkinsfile
+++ b/Jenkinsfile
--- a/Jenkinsfile_examples_test
+++ b/Jenkinsfile_examples_test
--- a/Jenkinsfile_numerics
+++ b/Jenkinsfile_numerics
--- a/Makefile
+++ b/Makefile
--- a/Makefile.am
+++ b/Makefile.am
--- a/Try_Openfpm
+++ b/Try_Openfpm
--- a/autogen.sh
+++ b/autogen.sh
--- a/build_pdata.sh
+++ b/build_pdata.sh
--- a/configure.ac
+++ b/configure.ac
--- a/dep_dir
+++ b/dep_dir
--- a/dependencies_dir
+++ b/dependencies_dir
--- a/example/Debugging/0_classes/Makefile
+++ b/example/Debugging/0_classes/Makefile
--- a/example/Debugging/0_classes/config.cfg
+++ b/example/Debugging/0_classes/config.cfg
--- a/example/Debugging/0_classes/main.cpp
+++ b/example/Debugging/0_classes/main.cpp
--- a/example/Debugging/1_classes/Makefile
+++ b/example/Debugging/1_classes/Makefile
--- a/example/Debugging/1_classes/config.cfg
+++ b/example/Debugging/1_classes/config.cfg
--- a/example/Debugging/1_classes/main.cpp
+++ b/example/Debugging/1_classes/main.cpp
--- a/example/Debugging/Makefile
+++ b/example/Debugging/Makefile
--- a/example/Grid/0_simple/Makefile
+++ b/example/Grid/0_simple/Makefile
--- a/example/Grid/0_simple/config.cfg
+++ b/example/Grid/0_simple/config.cfg
--- a/example/Grid/0_simple/main.cpp
+++ b/example/Grid/0_simple/main.cpp
--- a/example/Grid/1_stencil/Makefile
+++ b/example/Grid/1_stencil/Makefile
--- a/example/Grid/1_stencil/config.cfg
+++ b/example/Grid/1_stencil/config.cfg
--- a/example/Grid/1_stencil/main.cpp
+++ b/example/Grid/1_stencil/main.cpp
--- a/example/Grid/2_solve_eq/Makefile
+++ b/example/Grid/2_solve_eq/Makefile
--- a/example/Grid/2_solve_eq/config.cfg
+++ b/example/Grid/2_solve_eq/config.cfg
--- a/example/Grid/2_solve_eq/main.cpp
+++ b/example/Grid/2_solve_eq/main.cpp
--- a/example/Grid/3_gray_scott/Makefile
+++ b/example/Grid/3_gray_scott/Makefile
--- a/example/Grid/3_gray_scott/config.cfg
+++ b/example/Grid/3_gray_scott/config.cfg
--- a/example/Grid/3_gray_scott/main.cpp
+++ b/example/Grid/3_gray_scott/main.cpp
--- a/example/Grid/3_gray_scott_3d/Makefile
+++ b/example/Grid/3_gray_scott_3d/Makefile
--- a/example/Grid/3_gray_scott_3d/config.cfg
+++ b/example/Grid/3_gray_scott_3d/config.cfg
--- a/example/Grid/3_gray_scott_3d/main.cpp
+++ b/example/Grid/3_gray_scott_3d/main.cpp
--- a/example/Grid/3_gray_scott_3d_vectorization/Makefile
+++ b/example/Grid/3_gray_scott_3d_vectorization/Makefile
--- a/example/Grid/3_gray_scott_3d_vectorization/config.cfg
+++ b/example/Grid/3_gray_scott_3d_vectorization/config.cfg
--- a/example/Grid/3_gray_scott_3d_vectorization/main.cpp
+++ b/example/Grid/3_gray_scott_3d_vectorization/main.cpp
--- a/example/Grid/3_gray_scott_3d_vectorization/update_new.f90
+++ b/example/Grid/3_gray_scott_3d_vectorization/update_new.f90
--- a/example/Grid/Makefile
+++ b/example/Grid/Makefile
--- a/example/Makefile
+++ b/example/Makefile
--- a/example/Numerics/Makefile
+++ b/example/Numerics/Makefile
--- a/example/Numerics/PS-CMA-ES/Makefile
+++ b/example/Numerics/PS-CMA-ES/Makefile
--- a/example/Numerics/PS-CMA-ES/config.cfg
+++ b/example/Numerics/PS-CMA-ES/config.cfg
--- a/example/Numerics/PS-CMA-ES/f15_cec_const.hpp
+++ b/example/Numerics/PS-CMA-ES/f15_cec_const.hpp
--- a/example/Numerics/PS-CMA-ES/f15_cec_fun.hpp
+++ b/example/Numerics/PS-CMA-ES/f15_cec_fun.hpp
--- a/example/Numerics/PS-CMA-ES/main.cpp
+++ b/example/Numerics/PS-CMA-ES/main.cpp
--- a/example/Numerics/PSE/0_Derivative_approx_1D/Makefile
+++ b/example/Numerics/PSE/0_Derivative_approx_1D/Makefile
--- a/example/Numerics/PSE/0_Derivative_approx_1D/config.cfg
+++ b/example/Numerics/PSE/0_Derivative_approx_1D/config.cfg
--- a/example/Numerics/PSE/0_Derivative_approx_1D/main.cpp
+++ b/example/Numerics/PSE/0_Derivative_approx_1D/main.cpp
--- a/example/Numerics/PSE/1_Derivative_approx_1D_mp/Makefile
+++ b/example/Numerics/PSE/1_Derivative_approx_1D_mp/Makefile
--- a/example/Numerics/PSE/1_Derivative_approx_1D_mp/config.cfg
+++ b/example/Numerics/PSE/1_Derivative_approx_1D_mp/config.cfg
--- a/example/Numerics/PSE/1_Derivative_approx_1D_mp/main_float128.cpp
+++ b/example/Numerics/PSE/1_Derivative_approx_1D_mp/main_float128.cpp
--- a/example/Numerics/PSE/1_Diffusion_1D/Makefile
+++ b/example/Numerics/PSE/1_Diffusion_1D/Makefile
--- a/example/Numerics/PSE/1_Diffusion_1D/config.cfg
+++ b/example/Numerics/PSE/1_Diffusion_1D/config.cfg
--- a/example/Numerics/PSE/1_Diffusion_1D/main.cpp
+++ b/example/Numerics/PSE/1_Diffusion_1D/main.cpp
--- a/example/Numerics/PSE/Makefile
+++ b/example/Numerics/PSE/Makefile
--- a/example/Numerics/Stoke_flow/0_2D_incompressible/Makefile
+++ b/example/Numerics/Stoke_flow/0_2D_incompressible/Makefile
--- a/example/Numerics/Stoke_flow/0_2D_incompressible/config.cfg
+++ b/example/Numerics/Stoke_flow/0_2D_incompressible/config.cfg
--- a/example/Numerics/Stoke_flow/0_2D_incompressible/main_eigen.cpp
+++ b/example/Numerics/Stoke_flow/0_2D_incompressible/main_eigen.cpp
--- a/example/Numerics/Stoke_flow/0_2D_incompressible/main_petsc.cpp
+++ b/example/Numerics/Stoke_flow/0_2D_incompressible/main_petsc.cpp
--- a/example/Numerics/Stoke_flow/1_3D_incompressible/Makefile
+++ b/example/Numerics/Stoke_flow/1_3D_incompressible/Makefile
--- a/example/Numerics/Stoke_flow/1_3D_incompressible/config.cfg
+++ b/example/Numerics/Stoke_flow/1_3D_incompressible/config.cfg
--- a/example/Numerics/Stoke_flow/1_3D_incompressible/main_eigen.cpp
+++ b/example/Numerics/Stoke_flow/1_3D_incompressible/main_eigen.cpp
--- a/example/Numerics/Stoke_flow/1_3D_incompressible/main_petsc.cpp
+++ b/example/Numerics/Stoke_flow/1_3D_incompressible/main_petsc.cpp
--- a/example/Numerics/Stoke_flow/Makefile
+++ b/example/Numerics/Stoke_flow/Makefile
--- a/example/Numerics/Vortex_in_cell/Makefile
+++ b/example/Numerics/Vortex_in_cell/Makefile
--- a/example/Numerics/Vortex_in_cell/config.cfg
+++ b/example/Numerics/Vortex_in_cell/config.cfg
--- a/example/Numerics/Vortex_in_cell/main_vic_petsc.cpp
+++ b/example/Numerics/Vortex_in_cell/main_vic_petsc.cpp
--- a/example/Numerics/Vortex_in_cell/main_vic_petsc_opt.cpp
+++ b/example/Numerics/Vortex_in_cell/main_vic_petsc_opt.cpp
--- a/example/Plot/0_simple_graph/Makefile
+++ b/example/Plot/0_simple_graph/Makefile
--- a/example/Plot/0_simple_graph/config.cfg
+++ b/example/Plot/0_simple_graph/config.cfg
--- a/example/Plot/0_simple_graph/main.cpp
+++ b/example/Plot/0_simple_graph/main.cpp
--- a/example/Plot/2_PSE_convergence/Makefile
+++ b/example/Plot/2_PSE_convergence/Makefile
--- a/example/Plot/2_PSE_convergence/config.cfg
+++ b/example/Plot/2_PSE_convergence/config.cfg
--- a/example/Plot/2_PSE_convergence/main.cpp
+++ b/example/Plot/2_PSE_convergence/main.cpp
--- a/example/Plot/Makefile
+++ b/example/Plot/Makefile
--- a/example/README(YES, YOU MUST READ IT)
+++ b/example/README(YES, YOU MUST READ IT)
--- a/example/VCluster/0_simple/Makefile
+++ b/example/VCluster/0_simple/Makefile
--- a/example/VCluster/0_simple/config.cfg
+++ b/example/VCluster/0_simple/config.cfg
--- a/example/VCluster/0_simple/main.cpp
+++ b/example/VCluster/0_simple/main.cpp
--- a/example/VCluster/1_semantic/Makefile
+++ b/example/VCluster/1_semantic/Makefile
--- a/example/VCluster/1_semantic/config.cfg
+++ b/example/VCluster/1_semantic/config.cfg
--- a/example/VCluster/1_semantic/main.cpp
+++ b/example/VCluster/1_semantic/main.cpp
--- a/example/VCluster/2_serial_and_parallel/Makefile
+++ b/example/VCluster/2_serial_and_parallel/Makefile
--- a/example/VCluster/2_serial_and_parallel/config.cfg
+++ b/example/VCluster/2_serial_and_parallel/config.cfg
--- a/example/VCluster/2_serial_and_parallel/main.cpp
+++ b/example/VCluster/2_serial_and_parallel/main.cpp
--- a/example/VCluster/Makefile
+++ b/example/VCluster/Makefile
--- a/example/Vector/0_simple/Makefile
+++ b/example/Vector/0_simple/Makefile
--- a/example/Vector/0_simple/config.cfg
+++ b/example/Vector/0_simple/config.cfg
--- a/example/Vector/0_simple/main.cpp
+++ b/example/Vector/0_simple/main.cpp
--- a/example/Vector/1_HDF5_save_load/Makefile
+++ b/example/Vector/1_HDF5_save_load/Makefile
--- a/example/Vector/1_HDF5_save_load/config.cfg
+++ b/example/Vector/1_HDF5_save_load/config.cfg
--- a/example/Vector/1_HDF5_save_load/main.cpp
+++ b/example/Vector/1_HDF5_save_load/main.cpp
--- a/example/Vector/1_celllist/Makefile
+++ b/example/Vector/1_celllist/Makefile
--- a/example/Vector/1_celllist/config.cfg
+++ b/example/Vector/1_celllist/config.cfg
--- a/example/Vector/1_celllist/main.cpp
+++ b/example/Vector/1_celllist/main.cpp
--- a/example/Vector/1_ghost_get_put/Makefile
+++ b/example/Vector/1_ghost_get_put/Makefile
--- a/example/Vector/1_ghost_get_put/config.cfg
+++ b/example/Vector/1_ghost_get_put/config.cfg
--- a/example/Vector/1_ghost_get_put/main.cpp
+++ b/example/Vector/1_ghost_get_put/main.cpp
--- a/example/Vector/2_expressions/Makefile
+++ b/example/Vector/2_expressions/Makefile
--- a/example/Vector/2_expressions/config.cfg
+++ b/example/Vector/2_expressions/config.cfg
--- a/example/Vector/2_expressions/main.cpp
+++ b/example/Vector/2_expressions/main.cpp
--- a/example/Vector/2_expressions/out
+++ b/example/Vector/2_expressions/out
--- a/example/Vector/3_molecular_dynamic/Makefile
+++ b/example/Vector/3_molecular_dynamic/Makefile
--- a/example/Vector/3_molecular_dynamic/config.cfg
+++ b/example/Vector/3_molecular_dynamic/config.cfg
--- a/example/Vector/3_molecular_dynamic/main.cpp
+++ b/example/Vector/3_molecular_dynamic/main.cpp
--- a/example/Vector/3_molecular_dynamic/main_expr.cpp
+++ b/example/Vector/3_molecular_dynamic/main_expr.cpp
--- a/example/Vector/3_molecular_dynamic/main_expr_paper.cpp
+++ b/example/Vector/3_molecular_dynamic/main_expr_paper.cpp
--- a/example/Vector/3_molecular_dynamic/main_expr_vl.cpp
+++ b/example/Vector/3_molecular_dynamic/main_expr_vl.cpp
--- a/example/Vector/3_molecular_dynamic/main_vl.cpp
+++ b/example/Vector/3_molecular_dynamic/main_vl.cpp
--- a/example/Vector/4_complex_prop/Makefile
+++ b/example/Vector/4_complex_prop/Makefile
--- a/example/Vector/4_complex_prop/config.cfg
+++ b/example/Vector/4_complex_prop/config.cfg
--- a/example/Vector/4_complex_prop/main.cpp
+++ b/example/Vector/4_complex_prop/main.cpp
--- a/example/Vector/4_complex_prop/main_ser.cpp
+++ b/example/Vector/4_complex_prop/main_ser.cpp
--- a/example/Vector/4_multiphase_celllist_verlet/Makefile
+++ b/example/Vector/4_multiphase_celllist_verlet/Makefile
--- a/example/Vector/4_multiphase_celllist_verlet/config.cfg
+++ b/example/Vector/4_multiphase_celllist_verlet/config.cfg
--- a/example/Vector/4_multiphase_celllist_verlet/main.cpp
+++ b/example/Vector/4_multiphase_celllist_verlet/main.cpp
--- a/example/Vector/4_reorder/Makefile
+++ b/example/Vector/4_reorder/Makefile
--- a/example/Vector/4_reorder/config.cfg
+++ b/example/Vector/4_reorder/config.cfg
--- a/example/Vector/4_reorder/energy_force.hpp
+++ b/example/Vector/4_reorder/energy_force.hpp
--- a/example/Vector/4_reorder/main_comp_ord.cpp
+++ b/example/Vector/4_reorder/main_comp_ord.cpp
--- a/example/Vector/4_reorder/main_data_ord.cpp
+++ b/example/Vector/4_reorder/main_data_ord.cpp
--- a/example/Vector/4_reorder/main_expr.cpp
+++ b/example/Vector/4_reorder/main_expr.cpp
--- a/example/Vector/4_reorder/no_reorder.html
+++ b/example/Vector/4_reorder/no_reorder.html
--- a/example/Vector/4_reorder/reorder_10000.html
+++ b/example/Vector/4_reorder/reorder_10000.html
--- a/example/Vector/4_reorder/reorder_200.html
+++ b/example/Vector/4_reorder/reorder_200.html
--- a/example/Vector/5_molecular_dynamic_sym/Makefile
+++ b/example/Vector/5_molecular_dynamic_sym/Makefile
--- a/example/Vector/5_molecular_dynamic_sym/config.cfg
+++ b/example/Vector/5_molecular_dynamic_sym/config.cfg
--- a/example/Vector/5_molecular_dynamic_sym/main.cpp
+++ b/example/Vector/5_molecular_dynamic_sym/main.cpp
--- a/example/Vector/5_molecular_dynamic_sym_crs/Makefile
+++ b/example/Vector/5_molecular_dynamic_sym_crs/Makefile
--- a/example/Vector/5_molecular_dynamic_sym_crs/config.cfg
+++ b/example/Vector/5_molecular_dynamic_sym_crs/config.cfg
--- a/example/Vector/5_molecular_dynamic_sym_crs/main.cpp
+++ b/example/Vector/5_molecular_dynamic_sym_crs/main.cpp
--- a/example/Vector/6_complex_usage/Makefile
+++ b/example/Vector/6_complex_usage/Makefile
--- a/example/Vector/6_complex_usage/config.cfg
+++ b/example/Vector/6_complex_usage/config.cfg
--- a/example/Vector/6_complex_usage/main.cpp
+++ b/example/Vector/6_complex_usage/main.cpp
--- a/example/Vector/7_SPH_dlb/Makefile
+++ b/example/Vector/7_SPH_dlb/Makefile
--- a/example/Vector/7_SPH_dlb/config.cfg
+++ b/example/Vector/7_SPH_dlb/config.cfg
--- a/example/Vector/7_SPH_dlb/main.cpp
+++ b/example/Vector/7_SPH_dlb/main.cpp
--- a/example/Vector/7_SPH_dlb_opt/Makefile
+++ b/example/Vector/7_SPH_dlb_opt/Makefile
--- a/example/Vector/7_SPH_dlb_opt/config.cfg
+++ b/example/Vector/7_SPH_dlb_opt/config.cfg
--- a/example/Vector/7_SPH_dlb_opt/main.cpp
+++ b/example/Vector/7_SPH_dlb_opt/main.cpp
--- a/example/Vector/8_DEM/Makefile
+++ b/example/Vector/8_DEM/Makefile
--- a/example/Vector/8_DEM/config.cfg
+++ b/example/Vector/8_DEM/config.cfg
--- a/example/Vector/8_DEM/main.cpp
+++ b/example/Vector/8_DEM/main.cpp
--- a/example/Vector/Makefile
+++ b/example/Vector/Makefile
--- a/footer.html
+++ b/footer.html
--- a/foward_options
+++ b/foward_options
--- a/grid_dist_id.h55
+++ b/grid_dist_id.h55
--- a/header.html
+++ b/header.html
--- a/images/CartDecomposition_gen_vtk.cpp
+++ b/images/CartDecomposition_gen_vtk.cpp
--- a/images/Domain_decomposition.py
+++ b/images/Domain_decomposition.py
--- a/images/Makefile
+++ b/images/Makefile
--- a/images/Makefile.am
+++ b/images/Makefile.am
--- a/images/Metis_gen_vtk.cpp
+++ b/images/Metis_gen_vtk.cpp
--- a/images/domain_gen_vtk.cpp
+++ b/images/domain_gen_vtk.cpp
--- a/images/mooving_particles.py
+++ b/images/mooving_particles.py
--- a/images/mooving_particles_prc.py
+++ b/images/mooving_particles_prc.py
--- a/images/openfpm.dot
+++ b/images/openfpm.dot
--- a/images/particles_maps.py
+++ b/images/particles_maps.py
--- a/images/static/Domain_decomposition_external.jpg
+++ b/images/static/Domain_decomposition_external.jpg
--- a/images/static/Domain_decomposition_internal.jpg
+++ b/images/static/Domain_decomposition_internal.jpg
--- a/images/vector.cpp
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--- a/images/vector_dist.py
+++ b/images/vector_dist.py
--- a/images/vector_ghost.py
+++ b/images/vector_ghost.py
--- a/images/vector_particles.py
+++ b/images/vector_particles.py
--- a/images/vector_scal_vect.py
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--- a/libtool
+++ b/libtool
--- a/ltmain.sh
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--- a/m4/acx_mpi.m4
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--- a/m4/acx_pthread.m4
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--- a/m4/ax_cuda.m4
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--- a/m4/ax_libhilbert.m4
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--- a/m4/ax_openmp.m4
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--- a/m4/ax_suitesparse.m4
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--- a/m4/immdx_lib_metis.m4
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--- a/m4/immdx_lib_parmetis.m4
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--- a/ofpdoxygen.css
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--- a/openfpm_flags
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--- a/openfpm_pdata.doc
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--- a/openfpm_vcluster @ d1123fca
+++ b/openfpm_vcluster @ d1123fca
--- a/openmp_flags
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--- a/script/py/pack_examples.py
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--- a/script/py/process_examples.py
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--- a/src/DLB/DLB.hpp
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--- a/src/DLB/LB_Model.hpp
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--- a/src/Decomposition/CartDecomposition_ext.hpp
+++ b/src/Decomposition/CartDecomposition_ext.hpp
--- a/src/Decomposition/Distribution/DistParMetisDistribution.hpp
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--- a/src/Decomposition/Distribution/Distribution_unit_tests.hpp
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--- a/src/Decomposition/Distribution/MetisDistribution.hpp
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--- a/src/Decomposition/Distribution/ParMetisDistribution.hpp
+++ b/src/Decomposition/Distribution/ParMetisDistribution.hpp
--- a/src/Decomposition/Distribution/SpaceDistribution.hpp
+++ b/src/Decomposition/Distribution/SpaceDistribution.hpp
--- a/src/Decomposition/Distribution/SpaceDistributionWeight.hpp
+++ b/src/Decomposition/Distribution/SpaceDistributionWeight.hpp
--- a/src/Decomposition/Distribution/metis_util.hpp
+++ b/src/Decomposition/Distribution/metis_util.hpp
--- a/src/Decomposition/Distribution/metis_util_unit_test.hpp
+++ b/src/Decomposition/Distribution/metis_util_unit_test.hpp
--- a/src/Decomposition/Distribution/test_data/0_vtk_dist_space_distribution_0_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_dist_space_distribution_0_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_0_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_0_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_0_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_0_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_100_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_100_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_100_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_100_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_10_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_10_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_10_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_10_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_20_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_20_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_20_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_20_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_30_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_30_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_30_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_30_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_40_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_40_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_40_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_40_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_50_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_50_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_50_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_50_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_60_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_60_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_60_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_60_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_70_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_70_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_70_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_70_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_80_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_80_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_80_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_80_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_90_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_90_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_90_test.vtk
+++ b/src/Decomposition/Distribution/test_data/0_vtk_parmetis_distribution_90_test.vtk
--- a/src/Decomposition/Distribution/test_data/dec_optimizer_disc_graph0_test.vtk
+++ b/src/Decomposition/Distribution/test_data/dec_optimizer_disc_graph0_test.vtk
--- a/src/Decomposition/Distribution/test_data/dec_optimizer_disc_graph1_test.vtk
+++ b/src/Decomposition/Distribution/test_data/dec_optimizer_disc_graph1_test.vtk
--- a/src/Decomposition/Distribution/test_data/dec_optimizer_disc_graph2_test.vtk
+++ b/src/Decomposition/Distribution/test_data/dec_optimizer_disc_graph2_test.vtk
--- a/src/Decomposition/Distribution/test_data/dec_optimizer_disc_sub0_test.vtk
+++ b/src/Decomposition/Distribution/test_data/dec_optimizer_disc_sub0_test.vtk
--- a/src/Decomposition/Distribution/test_data/dec_optimizer_disc_sub1_test.vtk
+++ b/src/Decomposition/Distribution/test_data/dec_optimizer_disc_sub1_test.vtk
--- a/src/Decomposition/Distribution/test_data/dec_optimizer_disc_sub2_test.vtk
+++ b/src/Decomposition/Distribution/test_data/dec_optimizer_disc_sub2_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_0_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_0_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_0_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_0_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_100_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_100_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_100_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_100_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_10_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_10_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_10_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_10_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_20_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_20_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_20_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_20_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_30_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_30_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_30_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_30_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_40_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_40_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_40_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_40_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_50_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_50_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_50_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_50_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_60_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_60_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_60_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_60_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_70_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_70_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_70_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_70_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_80_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_80_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_80_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_80_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_90_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_90_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_90_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_dist_parmetis_distribution_90_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_metis_distribution_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_metis_distribution_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_metis_distribution_red_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_metis_distribution_red_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_metis_distribution_red_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_metis_distribution_red_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_metis_distribution_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_metis_distribution_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_metis_util_g_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_metis_util_g_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_metis_util_g_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_metis_util_g_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_metis_util_gp_osx_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_metis_util_gp_osx_test.vtk
--- a/src/Decomposition/Distribution/test_data/vtk_metis_util_gp_test.vtk
+++ b/src/Decomposition/Distribution/test_data/vtk_metis_util_gp_test.vtk
--- a/src/Decomposition/Domain_NN_calculator_cart.hpp
+++ b/src/Decomposition/Domain_NN_calculator_cart.hpp
--- a/src/Decomposition/Domain_NN_calculator_cart_unit_test.hpp
+++ b/src/Decomposition/Domain_NN_calculator_cart_unit_test.hpp
--- a/src/Decomposition/dec_optimizer.hpp
+++ b/src/Decomposition/dec_optimizer.hpp
--- a/src/Decomposition/dec_optimizer_unit_test.hpp
+++ b/src/Decomposition/dec_optimizer_unit_test.hpp
--- a/src/Decomposition/nn_processor_unit_test.hpp
+++ b/src/Decomposition/nn_processor_unit_test.hpp
--- a/src/Decomposition/shift_vect_converter.hpp
+++ b/src/Decomposition/shift_vect_converter.hpp
--- a/src/Decomposition/tests/.dirstamp
+++ b/src/Decomposition/tests/.dirstamp
--- a/src/Decomposition/tests/shift_vect_converter_tests.cpp
+++ b/src/Decomposition/tests/shift_vect_converter_tests.cpp
--- a/src/Graph/CartesianGraphFactory_unit_test.hpp
+++ b/src/Graph/CartesianGraphFactory_unit_test.hpp
--- a/src/Graph/dist_map_graph.hpp
+++ b/src/Graph/dist_map_graph.hpp
--- a/src/Graph/dist_map_graph_unit_test.hpp
+++ b/src/Graph/dist_map_graph_unit_test.hpp
--- a/src/Graph/ids.hpp
+++ b/src/Graph/ids.hpp
--- a/src/Graph/test_data/dist_graph_free_0_test.vtk
+++ b/src/Graph/test_data/dist_graph_free_0_test.vtk
--- a/src/Graph/test_data/dist_graph_free_1_test.vtk
+++ b/src/Graph/test_data/dist_graph_free_1_test.vtk
--- a/src/Graph/test_data/dist_graph_redistribution_0_test.vtk
+++ b/src/Graph/test_data/dist_graph_redistribution_0_test.vtk
--- a/src/Graph/test_data/dist_graph_redistribution_1_test.vtk
+++ b/src/Graph/test_data/dist_graph_redistribution_1_test.vtk
--- a/src/Grid/Iterators/grid_dist_id_iterator.hpp
+++ b/src/Grid/Iterators/grid_dist_id_iterator.hpp
--- a/src/Grid/Iterators/grid_dist_id_iterator_dec.hpp
+++ b/src/Grid/Iterators/grid_dist_id_iterator_dec.hpp
--- a/src/Grid/Iterators/grid_dist_id_iterator_dec_skin.hpp
+++ b/src/Grid/Iterators/grid_dist_id_iterator_dec_skin.hpp
--- a/src/Grid/Iterators/grid_dist_id_iterator_sub.hpp
+++ b/src/Grid/Iterators/grid_dist_id_iterator_sub.hpp
--- a/src/Grid/Iterators/grid_dist_id_iterator_util.hpp
+++ b/src/Grid/Iterators/grid_dist_id_iterator_util.hpp
--- a/src/Grid/Iterators/grid_dist_id_iterators_unit_tests.hpp
+++ b/src/Grid/Iterators/grid_dist_id_iterators_unit_tests.hpp
--- a/src/Grid/grid_dist_id.hpp
+++ b/src/Grid/grid_dist_id.hpp
--- a/src/Grid/grid_dist_id_comm.hpp
+++ b/src/Grid/grid_dist_id_comm.hpp
--- a/src/Grid/grid_dist_key.hpp
+++ b/src/Grid/grid_dist_key.hpp
--- a/src/Grid/grid_dist_util.hpp
+++ b/src/Grid/grid_dist_util.hpp
--- a/src/Grid/performance/grid_dist_performance.hpp
+++ b/src/Grid/performance/grid_dist_performance.hpp
--- a/src/Grid/staggered_dist_grid.hpp
+++ b/src/Grid/staggered_dist_grid.hpp
--- a/src/Grid/staggered_dist_grid_copy.hpp
+++ b/src/Grid/staggered_dist_grid_copy.hpp
--- a/src/Grid/staggered_dist_grid_util.hpp
+++ b/src/Grid/staggered_dist_grid_util.hpp
--- a/src/Grid/tests/.dirstamp
+++ b/src/Grid/tests/.dirstamp
--- a/src/Grid/tests/grid_dist_id_HDF5_chckpnt_restart_test.cpp
+++ b/src/Grid/tests/grid_dist_id_HDF5_chckpnt_restart_test.cpp
--- a/src/Grid/tests/grid_dist_id_unit_test.cpp
+++ b/src/Grid/tests/grid_dist_id_unit_test.cpp
--- a/src/Grid/tests/grid_dist_id_unit_test_ext_dom.hpp
+++ b/src/Grid/tests/grid_dist_id_unit_test_ext_dom.hpp
--- a/src/Grid/tests/grid_dist_id_unit_test_unb_ghost.hpp
+++ b/src/Grid/tests/grid_dist_id_unit_test_unb_ghost.hpp
--- a/src/Grid/tests/staggered_grid_dist_unit_test.cpp
+++ b/src/Grid/tests/staggered_grid_dist_unit_test.cpp
--- a/src/Makefile.am
+++ b/src/Makefile.am
--- a/src/Space/space_key.hpp
+++ b/src/Space/space_key.hpp
--- a/src/Vector/Iterators/vector_dist_iterator.hpp
+++ b/src/Vector/Iterators/vector_dist_iterator.hpp
--- a/src/Vector/Iterators/vector_dist_iterator_skin.hpp
+++ b/src/Vector/Iterators/vector_dist_iterator_skin.hpp
--- a/src/Vector/performance/.dirstamp
+++ b/src/Vector/performance/.dirstamp
--- a/src/Vector/performance/cell_list_comp_reorder.hpp
+++ b/src/Vector/performance/cell_list_comp_reorder.hpp
--- a/src/Vector/performance/cell_list_part_reorder.hpp
+++ b/src/Vector/performance/cell_list_part_reorder.hpp
--- a/src/Vector/performance/cl_comp_performance_graph.hpp
+++ b/src/Vector/performance/cl_comp_performance_graph.hpp
--- a/src/Vector/performance/cl_part_performance_graph.hpp
+++ b/src/Vector/performance/cl_part_performance_graph.hpp
--- a/src/Vector/performance/vector_dist_performance_common.hpp
+++ b/src/Vector/performance/vector_dist_performance_common.hpp
--- a/src/Vector/performance/vector_dist_performance_util.cpp
+++ b/src/Vector/performance/vector_dist_performance_util.cpp
--- a/src/Vector/performance/vector_dist_performance_util.hpp
+++ b/src/Vector/performance/vector_dist_performance_util.hpp
--- a/src/Vector/performance/verlet_performance_tests.hpp
+++ b/src/Vector/performance/verlet_performance_tests.hpp
--- a/src/Vector/se_class3_vector.hpp
+++ b/src/Vector/se_class3_vector.hpp
--- a/src/Vector/se_class3_vector_unit_tests.hpp
+++ b/src/Vector/se_class3_vector_unit_tests.hpp
--- a/src/Vector/tests/.dirstamp
+++ b/src/Vector/tests/.dirstamp
--- a/src/Vector/tests/vector_dist_HDF5_chckpnt_restart_test.cpp
+++ b/src/Vector/tests/vector_dist_HDF5_chckpnt_restart_test.cpp
--- a/src/Vector/tests/vector_dist_MP_unit_tests.cpp
+++ b/src/Vector/tests/vector_dist_MP_unit_tests.cpp
--- a/src/Vector/tests/vector_dist_NN_tests.cpp
+++ b/src/Vector/tests/vector_dist_NN_tests.cpp
--- a/src/Vector/tests/vector_dist_cell_list_tests.cpp
+++ b/src/Vector/tests/vector_dist_cell_list_tests.cpp
--- a/src/Vector/tests/vector_dist_complex_prp_unit_test.cpp
+++ b/src/Vector/tests/vector_dist_complex_prp_unit_test.cpp
--- a/src/Vector/tests/vector_dist_unit_test.cpp
+++ b/src/Vector/tests/vector_dist_unit_test.cpp
--- a/src/Vector/tests/vector_dist_util_unit_tests.hpp
+++ b/src/Vector/tests/vector_dist_util_unit_tests.hpp
--- a/src/Vector/vector_dist.hpp
+++ b/src/Vector/vector_dist.hpp
--- a/src/Vector/vector_dist_comm.hpp
+++ b/src/Vector/vector_dist_comm.hpp
--- a/src/Vector/vector_dist_dlb_test.hpp
+++ b/src/Vector/vector_dist_dlb_test.hpp
--- a/src/Vector/vector_dist_key.hpp
+++ b/src/Vector/vector_dist_key.hpp
--- a/src/Vector/vector_dist_multiphase_functions.hpp
+++ b/src/Vector/vector_dist_multiphase_functions.hpp
--- a/src/Vector/vector_dist_ofb.hpp
+++ b/src/Vector/vector_dist_ofb.hpp
--- a/src/aclocal.m4
+++ b/src/aclocal.m4
--- a/src/config.h.in
+++ b/src/config.h.in
--- a/src/config.h.in~
+++ b/src/config.h.in~
--- a/src/debug.hpp
+++ b/src/debug.hpp
--- a/src/gargabe.hpp
+++ b/src/gargabe.hpp
--- a/src/lib/.dirstamp
+++ b/src/lib/.dirstamp
--- a/src/lib/pdata.cpp
+++ b/src/lib/pdata.cpp
--- a/src/main.cpp
+++ b/src/main.cpp
--- a/src/pdata_performance.cpp
+++ b/src/pdata_performance.cpp
--- a/src/stamp-h1
+++ b/src/stamp-h1
--- a/src/test_isolation.hpp
+++ b/src/test_isolation.hpp
--- a/src/test_multiple_o.cpp
+++ b/src/test_multiple_o.cpp
--- a/src/unit_test_init_cleanup.hpp
+++ b/src/unit_test_init_cleanup.hpp
--- a/test_data/vector_dist_24.h5
+++ b/test_data/vector_dist_24.h5
--- a/update
+++ b/update
--- a/upgrade
+++ b/upgrade
--- a/vector_dist.h5
+++ b/vector_dist.h5