Commit befedb14 authored by pippel's avatar pippel
Browse files

Update README.md

parent e5b759da
......@@ -20,6 +20,40 @@ HiFi + HiC assembly (Jochen Rink)
# PacBio_hifisummary
__CCS reads (qv >= 0.99)__
|#|Library|SMRTLink|file|ccs_version|num_seqs|sum_len (Gb)|min_len|avg_len (Kb)|max_len (Kb)|N50 (Kb)|avg_qv|Description|TotalLength|NumRecords|MultiJobId|InstCtrlVer|SigProcVer|WellName|Concentration|OnPlateLoadingConcentration|InsertSize|IsoSeq|IsCCS|BioSample|AutomationName|CollectionNumber|CellIndex|SetNumber|CellPac_Barcode|CellPac_LotNumber|CellPac_ChipLayout|ControlKit_Barcode|ControlKit_LotNumber|ControlKit_PartNumber|ControlKit_ExpirationDate|TemplatePrepKit_Barcode|TemplatePrepKit_LotNumber|TemplatePrepKit_PartNumber|TemplatePrepKit_ExpirationDate|BindingKit_Barcode|BindingKit_LotNumber|BindingKit_PartNumber|BindingKit_ExpirationDate|SequencingKitPlate_Barcode|SequencingKitPlate_LotNumber|SequencingKitPlate_PartNumber|SequencingKitPlate_ExpirationDate|ReagentTubes_Barcode|ReagentTubes_LotNumber|ReagentTubes_PartNumber|ReagentTubes_ExpirationDate|v_ics|v_iui|v_chemistry|v_pa|v_paws|v_ppa|v_realtime|v_transfer|v_smrtimisc|v_smrttools|v_smrtlink-analysisservices-gui|v_smrtinub|v_smrtlink|
|--:|:------|:----:|:--------------|:------:|------:|-----:|-----:|-------:|------:|------:|------:|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|------|
|1|L69050|[64046](https://smrtlink.biotec.tu-dresden.de:8243/sl/data-management/dataset-detail/922e108d-c5bd-4706-832c-0d1b6b6128b0?type=subreads&show=thumbnails)|m64046_210416_155436.ccs.fasta|v6.0.0-2-gf165cc26|1,759,324|22.72|84|12.91|43.64|13.32|33.71|LAB3067_L69050_HiFi_Platynereis-dumerilii_60pM_30h_Bdgkit2.0-newBindingKit_IC1.0_withBeadpurif_DiffLoading_SMRTcell_Lot416440|339144781385|28731476|0|9.0.0.92233|9.0.0.92233|B03|0|60|13000|false|true|PlaDum|Diffusion|1|1|0|DA080688|416440|Spider_1p0_NTO|Lxxxxx101717600123199|Lxxxxx|101-717-600|2099-12-31|018310100938900043021|018310|100-938-900|2021-04-30|019234101789500032922|019234|101-789-500|2022-03-29|019750101826100111921|019750|101-826-100|2021-11-19|019058100619600063025|019058|100-619-600|2025-06-30|9.0.0.92233|9.0.0.92233|9.0.0.92017|9.0.0.92233|9.0.0.92233|9.0.0.92233|9.0.0.92233|9.0.0.92233|9.0.0.92188|9.0.0.92188|9.0.0.92188|9.0.0.92188|9.0.0.92188|
|Summary | |
|:-----------------------|------:|
|Number of SMRTs | 1|
|overall reads | 1,759,324|
|overall yield (Gb) | 22.719|
|avg. reads per SMRT | 1,759,324|
|avg. yield (Gb) per SMRT| 22.719|
|avg. read length (bp) | 12,913|
|avg. N50 length (bp) | 13,317|
|avg. QV | 33.710|
__CCS reads (0.97 < qv < 0.99); can eventually be used for assembly__
|#|file |num_seqs|sum_len (Gb)|min_len|avg_len (Kb)|max_len (Kb)|N50 (Kb)|avg_qv
|--:|:--------------|------:|-----:|-----:|-------:|------:|------:|------:|
|1|m64046_210416_155436.okccs.fasta|217,662|2.961|622|13.61|37.82|14.14|17.84|
|Summary | |
|:-----------------------|------:|
|Number of SMRTs | 1|
|overall reads | 217,662|
|overall yield (Gb) | 2.961|
|avg. reads per SMRT | 217,662|
|avg. yield (Gb) per SMRT| 2.961|
|avg. read length (bp) | 13,605|
|avg. N50 length (bp) | 14,139|
|avg. QV | 17.839|
# BioNano_summary
# 10X_summary
......
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