Commit 23e3dd6b authored by Holger Brandl's avatar Holger Brandl

fixed deleteion of md and figures directory

parent e3309547
...@@ -106,3 +106,11 @@ knitr::opts_knit$set( ...@@ -106,3 +106,11 @@ knitr::opts_knit$set(
rmarkdown::render(input=tmpScript,output_file=str_replace(basename(r_script), ".R", ".html"), rmarkdown::render(input=tmpScript,output_file=str_replace(basename(r_script), ".R", ".html"),
output_format=rmarkdown::html_document(toc = opts$toc, keep_md=T, pandoc_args=paste0("--include-in-header=", jsAddons)), output_format=rmarkdown::html_document(toc = opts$toc, keep_md=T, pandoc_args=paste0("--include-in-header=", jsAddons)),
output_dir=getwd()) output_dir=getwd())
if(!keep_markdown_files){
unlink(str_replace(basename(r_script), ".R", ".md"))
}
## delete figures directory since all plots should be embedded anyway
echo("deleteing", paste0(str_replace(basename(r_script), ".R", ""), "_files"))
unlink(paste0(str_replace(basename(r_script), ".R", ""), "_files"), recursive=T)
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