Commit 64ef875b authored by Holger Brandl's avatar Holger Brandl

migration from projects/bioinfo/holger to projects/bioinfo/brandl

parent 9e704e42
......@@ -133,7 +133,7 @@ enrResults <- cp_test(someGenes)
#enrResults <- quote(glMapped %>% do(cp_test(.$entrez_gene_id))) %>% cache_it(paste0("enrdata_", digest(glMapped)))
## test custom ontology
#enrichrFile_TFchip = "/projects/bioinfo/holger/data/enrichr_datasets/ENCODE_TF_ChIP-seq_2015.txt"
#enrichrFile_TFchip = "/projects/bioinfo/brandl/data/enrichr_datasets/ENCODE_TF_ChIP-seq_2015.txt"
#tfChipOnt <- convert_enrichr_cp(enrichrFile_TFchip)
......
......@@ -7,7 +7,7 @@ devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v
parseAlgnSummary_T2_0_11 <- function(alignSummary){
#alignSummary="/projects/bioinfo/holger/projects/marta_rnaseq/human_leipzig/mapping/S5382_aRG_1b_rep1/align_summary.txt"
#alignSummary="/projects/bioinfo/brandl/projects/marta_rnaseq/human_leipzig/mapping/S5382_aRG_1b_rep1/align_summary.txt"
algnData <- readLines(alignSummary)
data.frame(
......
......@@ -70,7 +70,7 @@ jlistReport(){
fi
# ## add spin.R
# export PATH=/projects/bioinfo/holger/bioinfo_templates/misc:$PATH
# export PATH=/projects/bioinfo/brandl/bioinfo_templates/misc:$PATH
# source $(which spin_utils.sh)
......
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