From 8332f5331419eeb3b81391544127b77ae1ecb007 Mon Sep 17 00:00:00 2001
From: Holger Brandl <brandl@mpi-cbg.de>
Date: Fri, 18 Jul 2014 12:54:58 +0200
Subject: [PATCH] fixed naming
---
R/bio/cummerutils.R | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/R/bio/cummerutils.R b/R/bio/cummerutils.R
index dcba773..ed55dd2 100644
--- a/R/bio/cummerutils.R
+++ b/R/bio/cummerutils.R
@@ -4,7 +4,7 @@ require.auto(cummeRbund)
getExpressedGenes <- function(cuff, minFPKM=1, logMode=F){
- fpkmMat<-repFpkmMatrix(genes(mmusCuff))
+ fpkmMat<-repFpkmMatrix(genes(cuff))
if(logMode) fpkmMat<-log10(fpkmMat+1) ## add a pseudocount
--
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