From 9f42abb52e08d06612dfdb6d7c6968420356872b Mon Sep 17 00:00:00 2001
From: Holger Brandl <brandl@mpi-cbg.de>
Date: Wed, 26 Nov 2014 12:41:16 +0100
Subject: [PATCH] cont. with dge analysis

---
 R/utils/spinr.R | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/R/utils/spinr.R b/R/utils/spinr.R
index 44e857c..68eb8bb 100644
--- a/R/utils/spinr.R
+++ b/R/utils/spinr.R
@@ -27,6 +27,10 @@ cssHeader='
 
 ## custom title http://stackoverflow.com/questions/14124022/setting-html-meta-elements-with-knitr
 opts_chunk$set(cache = TRUE, fig.width=10, width=120)
+
+## tell knitr to stop on errors https://github.com/yihui/knitr/issues/344 and http://yihui.name/knitr/options
+opts_knit$set(stop_on_error = 2L)
+
 knit2html(basename(rmdScript), header=cssHeader)
 
 file.remove(basename(rmdScript))
-- 
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