From c1c31c4532c9902cde3a9e9b3219fbe2fc6db77a Mon Sep 17 00:00:00 2001 From: Lena Hersemann Date: Tue, 12 Mar 2019 14:33:05 +0100 Subject: [PATCH] updated data paths in rend.R README file --- tools/rendr/README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tools/rendr/README.md b/tools/rendr/README.md index 7427626..11b8413 100644 --- a/tools/rendr/README.md +++ b/tools/rendr/README.md @@ -9,7 +9,7 @@ Download a local copy and add it to your path using ``` targetDirectory=~/bin/rendr mkdir -p $targetDirectory -wget -NP $targetDirectory --no-check-certificate https://raw.githubusercontent.com/holgerbrandl/datautils/master/tools/rendr/rend.R +wget -NP $targetDirectory --no-check-certificate https://git.mpi-cbg.de/bioinfo/datautils/raw/master/tools/rendr/rend.R chmod +x $targetDirectory/rend.R echo 'export PATH='"$targetDirectory"':$PATH' >> ~/.bash_profile ``` @@ -31,7 +31,7 @@ The report will be created in the current working directory. To learn about opti In case you want to render R snippets you can source a small bash function that wraps rend.R ``` -source <(curl https://raw.githubusercontent.com/holgerbrandl/datautils/master/R/rendr/rendr_utils.sh 2>&1 2>/dev/null) +source <(curl https://git.mpi-cbg.de/bioinfo/datautils/raw/master/tools/rendr/rendr_utils.sh 2>&1 2>/dev/null) ``` Now you can spin R snippets by piping them into `spinsnip` -- GitLab