Commit c1c31c45 authored by Lena Hersemann's avatar Lena Hersemann

updated data paths in rend.R README file

parent 67b49e8e
...@@ -9,7 +9,7 @@ Download a local copy and add it to your path using ...@@ -9,7 +9,7 @@ Download a local copy and add it to your path using
``` ```
targetDirectory=~/bin/rendr targetDirectory=~/bin/rendr
mkdir -p $targetDirectory mkdir -p $targetDirectory
wget -NP $targetDirectory --no-check-certificate https://raw.githubusercontent.com/holgerbrandl/datautils/master/tools/rendr/rend.R wget -NP $targetDirectory --no-check-certificate https://git.mpi-cbg.de/bioinfo/datautils/raw/master/tools/rendr/rend.R
chmod +x $targetDirectory/rend.R chmod +x $targetDirectory/rend.R
echo 'export PATH='"$targetDirectory"':$PATH' >> ~/.bash_profile echo 'export PATH='"$targetDirectory"':$PATH' >> ~/.bash_profile
``` ```
...@@ -31,7 +31,7 @@ The report will be created in the current working directory. To learn about opti ...@@ -31,7 +31,7 @@ The report will be created in the current working directory. To learn about opti
In case you want to render R snippets you can source a small bash function that wraps rend.R In case you want to render R snippets you can source a small bash function that wraps rend.R
``` ```
source <(curl https://raw.githubusercontent.com/holgerbrandl/datautils/master/R/rendr/rendr_utils.sh 2>&1 2>/dev/null) source <(curl https://git.mpi-cbg.de/bioinfo/datautils/raw/master/tools/rendr/rendr_utils.sh 2>&1 2>/dev/null)
``` ```
Now you can spin R snippets by piping them into `spinsnip` Now you can spin R snippets by piping them into `spinsnip`
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