diff --git a/R/rknit/rknit.sh b/R/rknit/rknit.sh index 1904cf8b384c7750ef9ddb0506f56aaf749028fc..e8f2351b2248b0d26f1b58399b0caa7f73f8937f 100644 --- a/R/rknit/rknit.sh +++ b/R/rknit/rknit.sh @@ -29,13 +29,13 @@ rknit(){ # cat $rscript | grep -Fv '#!' | Rscript --vanilla -e 'source("/Users/brandl/Dropbox/Public/datautils/R/rknit/rknit_preprocessor.R")' >> $tmpRmd # cat $rscript | sed 's/^#>$//g'| grep -Fv '#!' | Rscript --vanilla -e 'devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/master/R/rknit/rknit_preprocessor.R")' | grep -v "^#>" >> $tmpRmd - cat $rscript | sed 's/^#>$//g' | grep -Fv '#!'| grep -v '^#+$' | Rscript --vanilla -e 'devtools::source_url("https://dl.dropboxusercontent.com/u/113630701/datautils/R/rknit/rknit_preprocessor.R")' >> $tmpRmd + cat $rscript | sed 's/^#>$//g' | grep -Fv '#!'| grep -Ev '^#+$' | Rscript --vanilla -e 'devtools::source_url("https://dl.dropboxusercontent.com/u/113630701/datautils/R/rknit/rknit_preprocessor.R")' >> $tmpRmd echo '```' >> $tmpRmd echo 'require(knitr); options(width=150); opts_chunk$set(cache = TRUE, fig.width=10, width=100); knit2html("'$tmpRmd'", output="'$(basename $rscript .R)'")' | R --vanilla -q -# rm $(basename $rscript .R) $tmpRmd + rm $(basename $rscript .R) $tmpRmd }