diff --git a/bash/lsf_utils.sh b/bash/lsf_utils.sh index 850d4200fd543fe3df4f3f021c6bcfb617f81066..7e292cdb1e831c69aa2e73bfdd984870bc15af9b 100644 --- a/bash/lsf_utils.sh +++ b/bash/lsf_utils.sh @@ -69,8 +69,16 @@ jlistReport(){ joblistFile=$1 fi - echo "Creating report for $joblistFile" - echo "reportName='$joblistFile'; devtools::source_url('https://dl.dropboxusercontent.com/u/113630701/datautils/bash/CreateJobReport.R',local=T)" | R --no-save --no-restore 2>&1 > /dev/null +# ## add spin.R +# export PATH=/projects/bioinfo/holger/bioinfo_templates/misc:$PATH +# source $(which spin_utils.sh) + wget wget https://dl.dropboxusercontent.com/u/113630701/datautils/bash/CreateJobReport.R + chmod u+x CreateJobReport.R + CreateJobReport.R $joblistFile + +# echo "Creating report for $joblistFile" +# echo "reportName='$joblistFile'; devtools::source_url('https://dl.dropboxusercontent.com/u/113630701/datautils/bash/CreateJobReport.R',local=T)" | spinsnip $(echo $joblistFile | tr -d ".") + rm CreateJobReport.R } export -f jlistReport