From ffbcdbc1bddd1abb8a9652550019e29d95bdf3a4 Mon Sep 17 00:00:00 2001
From: Holger Brandl <brandl@mpi-cbg.de>
Date: Mon, 2 Feb 2015 14:29:56 +0100
Subject: [PATCH] simplified report generation
---
bash/lsf_utils.sh | 12 ++++++++++--
1 file changed, 10 insertions(+), 2 deletions(-)
diff --git a/bash/lsf_utils.sh b/bash/lsf_utils.sh
index 850d420..7e292cd 100644
--- a/bash/lsf_utils.sh
+++ b/bash/lsf_utils.sh
@@ -69,8 +69,16 @@ jlistReport(){
joblistFile=$1
fi
- echo "Creating report for $joblistFile"
- echo "reportName='$joblistFile'; devtools::source_url('https://dl.dropboxusercontent.com/u/113630701/datautils/bash/CreateJobReport.R',local=T)" | R --no-save --no-restore 2>&1 > /dev/null
+# ## add spin.R
+# export PATH=/projects/bioinfo/holger/bioinfo_templates/misc:$PATH
+# source $(which spin_utils.sh)
+ wget wget https://dl.dropboxusercontent.com/u/113630701/datautils/bash/CreateJobReport.R
+ chmod u+x CreateJobReport.R
+ CreateJobReport.R $joblistFile
+
+# echo "Creating report for $joblistFile"
+# echo "reportName='$joblistFile'; devtools::source_url('https://dl.dropboxusercontent.com/u/113630701/datautils/bash/CreateJobReport.R',local=T)" | spinsnip $(echo $joblistFile | tr -d ".")
+ rm CreateJobReport.R
}
export -f jlistReport
--
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