inced commons dependencies

dge_workflow/cuffdiff_report.R

@@ -22,6 +22,7 @@ Options:
 opts <- docopt(doc, commandArgs(TRUE)) ## does not work when spining
 ## florio_11b: setwd("/lustre/projects/bioinfo/holger/projects/florio_11b/cuffdiff/dge_report"); opts <- docopt(doc, "--constrasts contrasts.txt --pcutoff 0.01 /projects/bioinfo/holger/projects/florio_11b/cuffdiff")
 # opts <- docopt(doc, "--undirected  ..")
+# opts <- docopt(doc, "..")
 # opts <- docopt(doc, paste(Sys.getenv("DGE_PARAMS"), ".."))
 ## todo use commandArgs here!!
 #opts <- docopt(doc, paste(Sys.getenv("DGE_PARAMS"), paste(commandArgs(TRUE), collapse=" ")))
@@ -47,8 +48,8 @@ if(is.na(file.info(cuffdb_directory)$isdir)){
 }
 
 
-devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/master/R/core_commons.R")
-devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.8/R/ggplot_commons.R")
+devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.10/R/core_commons.R")
+devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.10/R/ggplot_commons.R")
 devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/master/R/bio/diffex_commons.R")
 
 #+ results='asis', echo=FALSE