Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
bioinfo
ngs_tools
Commits
4872e96f
Commit
4872e96f
authored
Mar 15, 2017
by
Holger Brandl
Browse files
updated tag instructions
parent
75f91b8a
Changes
1
Hide whitespace changes
Inline
Side-by-side
README.md
View file @
4872e96f
...
...
@@ -26,6 +26,22 @@ To use the structure from above when working on bioinformatics-srv1 just use
```
How to tag it for a project
---------------------------
```
bash
# ensure there are no pending changes
# http://stackoverflow.com/questions/5139290/how-to-check-if-theres-nothing-to-be-committed-in-the-current-branch
git diff
--exit-code
# create the tag for current branch
(
cd
${
NGS_TOOLS
}
&&
test
-n
"
$project
"
&&
git diff
--exit-code
&&
git tag
"
${
project
}
__
$(
date
+
'%Y%m%d'
)
"
)
||
echo
"could not tag current branch"
# and log it
git describe
--tags
>>
${
baseDir
}
/.used_ngs_tools
```
How to create a new version tag
-------------------------------
...
...
@@ -33,7 +49,6 @@ How to create a new version tag
1.
Create branch:
```
cd /Volumes/projects/bioinfo/scripts/ngs_tools/dev
git checkout -b v3.23
git push
...
...
@@ -54,16 +69,9 @@ chmod -R -w ../$newVersion
```
ToDos
ToDo
====
-
Finish igv_track_range.sh
-
Write igv session xml programatically including adjusted track; render open
session link ( like
http://localhost:60151/load?file=/Users/brandl/Desktop/my_session.xml) to
reports above igv-link tables
-
Learn from http://www.bioconductor.org/help/workflows/rnaseqGene/
*
distance matrix using Poisson Distance
*
pca variance proportions on axis
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment