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ngs_tools
Commit 557ae598 authored by Lena Hersemann's avatar Lena Hersemann
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cosmetics

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ms_workflow/ms_data_prep.R
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......@@ -20,14 +20,7 @@ Options:
--renaming_scheme <file> Table with two columns with the "old" and "new" names
'
#commandArgs <- function(x) c("--renaming_scheme", "renaming_scheme.txt", "../provided", "exp_design.txt")
#commandArgs <- function(x) c("--renaming_scheme", "../provided/renaming_scheme.xlsx", "../provided/20181122-133344-Barbara-scaffoldDB-all-txt", "exp_design.txt")
#commandArgs <- function(x) c("../provided/20181122-133344-Barbara-scaffoldDB-all-txt", "exp_design.txt")
#commandArgs <- function(x) c("../provided/20181102-Bar-MQ-Scaffold_Holger", "../provided/renaming_scheme.xlsx")
#commandArgs <- function(x) c("proteinGroups", "renaming_scheme.txt", "exp_design.txt")
#commandArgs <- function(x) c(".", "renaming_scheme.xlsx")
opts = docopt(doc, commandArgs(TRUE))
#-----------------------------------------------------------------------------------------------------------------------
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