From 6f4c918064bcade302bf4dbcb3ff31a9db3b320c Mon Sep 17 00:00:00 2001
From: Lena Hersemann <herseman@mpi-cbg.de>
Date: Thu, 13 Sep 2018 09:06:16 +0200
Subject: [PATCH] added installation of gffcompare and RNAfold on bioinfo

---
 tool_setup.sh | 27 ++++++++++++++++++++++++++-
 1 file changed, 26 insertions(+), 1 deletion(-)

diff --git a/tool_setup.sh b/tool_setup.sh
index ebce172..ea3dfab 100755
--- a/tool_setup.sh
+++ b/tool_setup.sh
@@ -330,4 +330,29 @@ rm tip.tar.gz
 mkdir last
 mv last-bc08832db1a1 last/
 cd last/last-bc08832db1a1
-make install prefix=/home/brandl/bin/last/last-bc08832db1a1/
\ No newline at end of file
+make install prefix=/home/brandl/bin/last/last-bc08832db1a1/
+
+
+
+########################################################################################################################
+### gffcompare
+
+cd ~/bin/
+
+wget http://ccb.jhu.edu/software/stringtie/dl/gffcompare-0.10.4.tar.gz
+tar -xvzf gffcompare-0.10.4.tar.gz
+cd gffcompare-0.10.4
+make
+
+
+########################################################################################################################
+### RNAfold
+
+cd ~/bin/
+
+wget https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/ViennaRNA-2.4.9.tar.gz
+tar -zxf ViennaRNA-2.4.9.tar.gz
+cd ViennaRNA-2.4.9
+./configure --prefix=/home/brandl/bin/ViennaRNA-2.4.9
+make
+make install
\ No newline at end of file
-- 
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