Adds Gene Myers pacbio tools

tool_setup.sh

@@ -413,3 +413,40 @@ brew install brewsci/bio/pymol
 
 # You can now run PyMol by typing
 pymol
+
+
+# ==========================================================================
+# PacBio tools
+# ==========================================================================
+
+#
+# DALIGNER
+# --------------------------------------------------------------------------
+cd ~/bin
+git clone https://github.com/thegenemyers/DALIGNER.git
+cd DALIGNER
+
+make
+
+
+#
+# DAMAPPER
+# --------------------------------------------------------------------------
+cd ~/bin
+git clone https://github.com/thegenemyers/DAMAPPER.git
+cd DAMAPPER
+
+make
+
+
+#
+# DEXTRACTOR
+# --------------------------------------------------------------------------
+
+cd ~/bin
+git clone git@github.com:thegenemyers/DEXTRACTOR.git
+cd DEXTRACTOR
+## replace hdf5 binary location in Makefile
+# /sw/apps/hdf5/current/
+module load hdf5/1.8.20
+make
\ No newline at end of file