From 7d5cb986d671dffa4ae072490a961c326ec009c5 Mon Sep 17 00:00:00 2001 From: domingue Date: Tue, 24 Sep 2019 10:57:39 +0200 Subject: [PATCH] Adds Gene Myers pacbio tools --- tool_setup.sh | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/tool_setup.sh b/tool_setup.sh index 0009ec9..e9a5f59 100755 --- a/tool_setup.sh +++ b/tool_setup.sh @@ -413,3 +413,40 @@ brew install brewsci/bio/pymol # You can now run PyMol by typing pymol + + +# ========================================================================== +# PacBio tools +# ========================================================================== + +# +# DALIGNER +# -------------------------------------------------------------------------- +cd ~/bin +git clone https://github.com/thegenemyers/DALIGNER.git +cd DALIGNER + +make + + +# +# DAMAPPER +# -------------------------------------------------------------------------- +cd ~/bin +git clone https://github.com/thegenemyers/DAMAPPER.git +cd DAMAPPER + +make + + +# +# DEXTRACTOR +# -------------------------------------------------------------------------- + +cd ~/bin +git clone git@github.com:thegenemyers/DEXTRACTOR.git +cd DEXTRACTOR +## replace hdf5 binary location in Makefile +# /sw/apps/hdf5/current/ +module load hdf5/1.8.20 +make \ No newline at end of file -- GitLab