added report links

dge_workflow/dge_star_template.sh

@@ -147,8 +147,16 @@ git describe --tags >> ${baseDir}/.used_ngs_tools
 
 
 ## bidirectional sync with project space
-## todo define mount path on bioinfo for bidirectional synching
-# ~/bin/unison ${baseDir:=error}  /net/fileserver-nfs/stornext/snfs3/projects/huttnerlab/Paul/fam72d_transfection_seq/data -fastcheck -times -perms 0 -batch
+#remoteProjectDir=/net/fileserver-nfs/stornext/snfs3/projects/ TODO define mount path on bioinfo for bidirectional synching
+(ls "${remoteProjectDir}" "${baseDir}" && ~/bin/unison ${baseDir}  ${remoteProjectDir}/data -fastcheck -times -perms 0 -batch) || echo "could not sync data"
+
+## update scripts working copy in project space
+#git clone "git@git.mpi-cbg.de:bioinfo/${project}.git" ${remoteProjectDir}/scripts
+(ls "${remoteProjectDir}/scripts" > /dev/null && cd ${remoteProjectDir}/scripts/ && git pull) || echo "could not sync data"
+
+
+## also update the git copy of the script
+
 
 # or use a uni-directional sync
 #rsync -avsn --delete  ${baseDir} brandl@fileserver:/projects//file/server/path