From 815f3301b792ea1b2765af1d1496f897d729e2e1 Mon Sep 17 00:00:00 2001
From: Holger Brandl <holgerbrandl@gmail.com>
Date: Tue, 23 Feb 2016 15:23:36 +0100
Subject: [PATCH] added backward compatibility wrappers for old shell cluster
utils
---
dge_workflow/dge_utils.sh | 17 ++++++++++++++---
1 file changed, 14 insertions(+), 3 deletions(-)
diff --git a/dge_workflow/dge_utils.sh b/dge_workflow/dge_utils.sh
index 5db922b..216be8f 100755
--- a/dge_workflow/dge_utils.sh
+++ b/dge_workflow/dge_utils.sh
@@ -27,9 +27,20 @@ export PATH=/home/brandl/bin/subread-1.4.6-p3-Linux-x86_64/bin:$PATH
#export PATH=/home/brandl/bin/STAR/STAR-STAR_2.4.1d/source:$PATH
export PATH=/home/brandl/bin/STAR-2.5.0b/source:$PATH
-export PATH=$PATH:/projects/bioinfo/scripts/joblist_v0.5-SNAPSHOT
-#export PATH=/projects/bioinfo/scripts/joblist_v0.5-SNAPSHOT:$PATH
-#eval "$(jl shortcuts)"
+
+## add cluster job manager
+export PATH=/projects/bioinfo/scripts/joblist_v0.5:$PATH
+
+## backward compatibility wrappers for old shell cluster utils
+joblist(){
+ jl add $*
+}
+export -f joblist
+
+wait4jobs(){
+ jl wait $*
+}
+export -f wait4jobs
## also add spinr
export PATH=$PATH:/projects/bioinfo/scripts/spinr
--
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