diff --git a/dge_workflow/dge_utils.sh b/dge_workflow/dge_utils.sh index 693e9da6f45e0f9c137f14059048abe1555a6f7d..7ef500a9ea427a9022a7434f1e55f181b3a8a5af 100755 --- a/dge_workflow/dge_utils.sh +++ b/dge_workflow/dge_utils.sh @@ -188,7 +188,7 @@ bamLabels=$(echo "$bamFiles" |sed 's!.*/!!' | sed 's/_ca.bam//g' | sed 's/.bam// ## see how well bam files correlate using untrimmed data bcCmd="bamCorrelate bins --bamfiles $(echo $bamFiles | xargs echo) --labels $bamLabels --plotFile='bc.pdf' --outFileCorMatrix='bc.txt' --numberOfProcessors=6 --corMethod spearman --zMin 0.5 --zMax 1" -mysub "${project}__bamcorrelate" "$bcCmd" -q long -n 4 -R span[hosts=1] | blockScript +mysub "${project}__bamcorrelate" "$bcCmd" -q long -n 4 -R span[hosts=1] | blockScript .bamcorrelate mailme "$project: bamcorrelate done in $(pwd)"