From 820b69ac0294b0eef64ff72c69a61595c93bef11 Mon Sep 17 00:00:00 2001
From: Holger Brandl <brandl@mpi-cbg.de>
Date: Fri, 13 Mar 2015 18:34:13 +0100
Subject: [PATCH] cont. cs analysis
---
dge_workflow/dge_utils.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/dge_workflow/dge_utils.sh b/dge_workflow/dge_utils.sh
index 693e9da..7ef500a 100755
--- a/dge_workflow/dge_utils.sh
+++ b/dge_workflow/dge_utils.sh
@@ -188,7 +188,7 @@ bamLabels=$(echo "$bamFiles" |sed 's!.*/!!' | sed 's/_ca.bam//g' | sed 's/.bam//
## see how well bam files correlate using untrimmed data
bcCmd="bamCorrelate bins --bamfiles $(echo $bamFiles | xargs echo) --labels $bamLabels --plotFile='bc.pdf' --outFileCorMatrix='bc.txt' --numberOfProcessors=6 --corMethod spearman --zMin 0.5 --zMax 1"
-mysub "${project}__bamcorrelate" "$bcCmd" -q long -n 4 -R span[hosts=1] | blockScript
+mysub "${project}__bamcorrelate" "$bcCmd" -q long -n 4 -R span[hosts=1] | blockScript .bamcorrelate
mailme "$project: bamcorrelate done in $(pwd)"
--
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