From a496a7db16abcf0dae97bf7cf4e1e35ea4d96c60 Mon Sep 17 00:00:00 2001
From: Holger Brandl <brandl@mpi-cbg.de>
Date: Fri, 5 Dec 2014 15:17:03 +0100
Subject: [PATCH] cont cross-species analysis

---
 dge_workflow/dge_utils.sh | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/dge_workflow/dge_utils.sh b/dge_workflow/dge_utils.sh
index f62511e..646ca00 100755
--- a/dge_workflow/dge_utils.sh
+++ b/dge_workflow/dge_utils.sh
@@ -207,6 +207,8 @@ fi
 
 ## collect all bam-files and group them
 allBams=$(find $bamDir | grep ".bam$" | grep -v "unmapped" | sort)
+## todo use optional argument here --> default "unmapped" --> allow user to add others
+#allBams=$(find $bamDir | grep ".bam$" | grep -v "unmapped" | grep -v "1029" | sort)
 
 bamsSplit=""
 for label in $(echo $labels | tr ", " " "); do
-- 
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