diff --git a/dge_workflow/dge_utils.sh b/dge_workflow/dge_utils.sh index 32d6a7679bd4a3926898dd6dbfed4122e55b050d..cd3c54dc1773793dc6f93cac60d9f876ec10ff5c 100755 --- a/dge_workflow/dge_utils.sh +++ b/dge_workflow/dge_utils.sh @@ -12,7 +12,6 @@ source <(curl https://raw.githubusercontent.com/holgerbrandl/datautils/v1.12/R/s ## todo tweak this to work on bioinfo as well export PATH=/projects/bioinfo/holger/bin/bowtie2-2.2.2:$PATH export PATH=/projects/bioinfo/holger/bin/tophat-2.0.13.Linux_x86_64:$PATH -export PATH=/home/brandl/bin/STAR/STAR-STAR_2.4.1d/source:$PATH export PATH=/home/brandl/bin/cufflinks-2.2.1.Linux_x86_64:$PATH export PATH=/sw/apps/python/current/bin:$PATH export PATH=/home/brandl/bin/deepTools/bin:$PATH @@ -21,6 +20,9 @@ export PATH=/projects/bioinfo/holger/bin/bedtools-2.23.0/bin/:$PATH export PATH=/home/brandl/bin/spinr:$PATH export PATH=/home/brandl/bin/subread-1.4.6-p3-Linux-x86_64/bin:$PATH +#export PATH=/home/brandl/bin/STAR/STAR-STAR_2.4.1d/source:$PATH +export PATH=/home/brandl/bin/STAR/STAR_2.4.2a/source:$PATH + # which tophat; which bowtie2; which cuffdiff