Commit b431e9b4 authored by domingue's avatar domingue
Browse files

Added cellranger

parent e1ad6ffa
......@@ -572,3 +572,17 @@ make
make check
make install prefix=/projects/bioinfo/brandl/bin/hmmer-3.1b2/
# ==========================================================================
# cellranger
# ==========================================================================
cd /projects/bioinfo/brandl/bin
wget -O cellranger-4.0.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-4.0.0.tar.gz?Expires=1601514033&Policy=eyJTdGF0ZW1lbnQiOlt7IlJlc291cmNlIjoiaHR0cHM6Ly9jZi4xMHhnZW5vbWljcy5jb20vcmVsZWFzZXMvY2VsbC1leHAvY2VsbHJhbmdlci00LjAuMC50YXIuZ3oiLCJDb25kaXRpb24iOnsiRGF0ZUxlc3NUaGFuIjp7IkFXUzpFcG9jaFRpbWUiOjE2MDE1MTQwMzN9fX1dfQ__&Signature=i8aWxjTbrxy78xsmcJVHBCO4Rg2-EbbVz8XWl-bSyAj17mmRWlCkxhJlSjCT-bL5MgmH7OtGlHPlrWMpgGHTbmPwL1rNuChHorKuVxTfIIR7W4nl6BtkwwmJ4ZREXM~YJVxxfcqtGpoRlQUkvK-ODWTQjahnaINCQM1~8Etyi92WEIuYQFauZhh7cSdsY9a32oRrRYCnqm5RKu-xzD88T2lBc7dP~dwB0d3lknVolhmtQQt0u4cxNJVuTBXk4Nn964yRezS82x7r7MvFIpbsmqZoVbAEBO3tegiMWBrcXvWQUP2r3glInxaBntC2Gfm4CSQbhT~PIIZAKo7q6n38yA__&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA"
tar -zxvf cellranger-4.0.0.tar.gz
cd cellranger-4.0.0
## to convert reads
wget https://github.com/10XGenomics/bamtofastq/releases/download/v1.3.0/bamtofastq_linux
mv bamtofastq_linux bamtofastq
chmod +x bamtofastq
\ No newline at end of file
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