Commit babb412a authored by gohr's avatar gohr
Browse files

sets width and height for both GSEA exmaple plots at 670 and 380

parent 12657c79
......@@ -173,9 +173,10 @@ category_exists <- function(category, species) {
#'
#' In addition, GSEA outputs for each tested gene set an enrichment score (ES) and a normalized (to the size of each tested gene set) enrichment score (NES) that is comparable among gene sets of different size; a positive NES says that the tested gene set is enriched among the up-regulated genes at the beginning of the sorted gene list, a negative NES says that the tested gene set is enriched among the down-regulated genes at the end of the sorted gene list.
#'
#' The visualizations show for positive ESs a green mountain at the beginning of the sorted gene list (x axis), whereas they show a green valley at the end for negative ESs.
#' ![gsea_example](https://git.mpi-cbg.de/bioinfo/ngs_tools/uploads/6cf3f282c707fcd0e00df0374b8b55d9/gsea_example.png)
#' ![gsea_negES](https://git.mpi-cbg.de/bioinfo/ngs_tools/uploads/251f7dafe6249a1fa000c54ce50da58b/gsea_negES.png)
#' The visualizations show for positive ESs a green enrichment curve with positive mode (mountain) at the beginning of the sorted gene list (x axis), whereas they show for negative ESs a green enrichment curve with negative mode (valley) at the end of the x axis.
#'
#' <img src="https://git.mpi-cbg.de/bioinfo/ngs_tools/uploads/6cf3f282c707fcd0e00df0374b8b55d9/gsea_example.png" width="670" height="380">
#' <img src="https://git.mpi-cbg.de/bioinfo/ngs_tools/uploads/251f7dafe6249a1fa000c54ce50da58b/gsea_negES.png" width="670" height="380">
#'
#' More details: https://www.genepattern.org/modules/docs/GSEA/14
......
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