diff --git a/chipseq_workflow/chipseq_utils.sh b/chipseq_workflow/chipseq_utils.sh index 588fdfaa4bc44889509db8fbe344029f329e74c0..08d98973d4f5a39e11d739bb4a69a62f449d84bb 100755 --- a/chipseq_workflow/chipseq_utils.sh +++ b/chipseq_workflow/chipseq_utils.sh @@ -4,7 +4,9 @@ ## configure paths #python setup_w_cython.py install --prefix /home/brandl/bin/macs2 -export PATH=/home/brandl/bin/macs2/bin:$PATH + +export PATH=/projects/bioinfo/holger/bin/bedtools2-2.25.0/bin:${PATH} +export PATH=/home/brandl/bin/macs2/bin:${PATH} export PYTHONPATH=/home/brandl/bin/macs2/lib:$PYTHONPATH export PYTHONPATH=/home/brandl/bin/macs2/lib/python2.7/site-packages:$PYTHONPATH