From c08292963baf3f1dc2cbee1b23a123dad498bf90 Mon Sep 17 00:00:00 2001
From: Holger Brandl <holgerbrandl@gmail.com>
Date: Fri, 1 Jul 2016 12:49:44 +0200
Subject: [PATCH] added bedtools to PATH

---
 chipseq_workflow/chipseq_utils.sh | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/chipseq_workflow/chipseq_utils.sh b/chipseq_workflow/chipseq_utils.sh
index 588fdfa..08d9897 100755
--- a/chipseq_workflow/chipseq_utils.sh
+++ b/chipseq_workflow/chipseq_utils.sh
@@ -4,7 +4,9 @@
 ## configure paths
 #python setup_w_cython.py install --prefix /home/brandl/bin/macs2
 
-export PATH=/home/brandl/bin/macs2/bin:$PATH
+
+export PATH=/projects/bioinfo/holger/bin/bedtools2-2.25.0/bin:${PATH}
+export PATH=/home/brandl/bin/macs2/bin:${PATH}
 export PYTHONPATH=/home/brandl/bin/macs2/lib:$PYTHONPATH
 export PYTHONPATH=/home/brandl/bin/macs2/lib/python2.7/site-packages:$PYTHONPATH
 
-- 
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