Commit c2e112ea authored by Holger Brandl's avatar Holger Brandl
Browse files

revised install instructions for deeptools and STAR

parent 4e0d452b
## DeepTools
cd ~/bin
git clone https://github.com/dpryan79/pyBigWig.git
cd pyBigWig
python3 setup.py install --user
#easy_install-2.7 --user cython
wget http://cython.org/release/Cython-0.24.tar.gz
tar xvf Cython-0.24.tar.gz
cd Cython-0.24
python2 setup.py install --user
cd ~/bin
git clone https://github.com/pysam-developers/pysam
cd pysam
#python2 setup.py clean
python2 setup.py install --user
#cd ~/bin
#git clone https://github.com/dpryan79/pyBigWig.git
#cd pyBigWig
#python3 setup.py install --user
#
##easy_install-2.7 --user cython
#wget http://cython.org/release/Cython-0.24.tar.gz
#tar xvf Cython-0.24.tar.gz
#cd Cython-0.24
#python2 setup.py install --user
#
#
#cd ~/bin
#git clone https://github.com/pysam-developers/pysam
#cd pysam
##python2 setup.py clean
#python2 setup.py install --user
#
#
cd ~/bin
wget -O deepTools-2.4.2.tar.gz wget https://github.com/fidelram/deepTools/archive/2.4.2.tar.gz
tar xvf deepTools-2.4.2.tar.gz
......@@ -155,8 +155,9 @@ make
cd ~/bin
wget https://github.com/alexdobin/STAR/archive/2.5.2b.tar.gz
tar xvf 2.5.2b.tar.gz
cd STAR-2.5.2b/sources
cd STAR-2.5.2b/source
make
./STAR
......
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