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ngs_tools
Commits
c2e112ea
Commit
c2e112ea
authored
Mar 22, 2017
by
Holger Brandl
Browse files
revised install instructions for deeptools and STAR
parent
4e0d452b
Changes
1
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Inline
Side-by-side
tool_setup.sh
View file @
c2e112ea
## DeepTools
cd
~/bin
git clone https://github.com/dpryan79/pyBigWig.git
cd
pyBigWig
python3 setup.py
install
--user
#easy_install-2.7 --user cython
wget http://cython.org/release/Cython-0.24.tar.gz
tar
xvf Cython-0.24.tar.gz
cd
Cython-0.24
python2 setup.py
install
--user
cd
~/bin
git clone https://github.com/pysam-developers/pysam
cd
pysam
#python2 setup.py clean
python2 setup.py
install
--user
#
cd ~/bin
#
git clone https://github.com/dpryan79/pyBigWig.git
#
cd pyBigWig
#
python3 setup.py install --user
#
#
#easy_install-2.7 --user cython
#
wget http://cython.org/release/Cython-0.24.tar.gz
#
tar xvf Cython-0.24.tar.gz
#
cd Cython-0.24
#
python2 setup.py install --user
#
#
#
cd ~/bin
#
git clone https://github.com/pysam-developers/pysam
#
cd pysam
#
#python2 setup.py clean
#
python2 setup.py install --user
#
#
cd
~/bin
wget
-O
deepTools-2.4.2.tar.gz wget https://github.com/fidelram/deepTools/archive/2.4.2.tar.gz
tar
xvf deepTools-2.4.2.tar.gz
...
...
@@ -155,8 +155,9 @@ make
cd
~/bin
wget https://github.com/alexdobin/STAR/archive/2.5.2b.tar.gz
tar
xvf 2.5.2b.tar.gz
cd
STAR-2.5.2b/source
s
cd
STAR-2.5.2b/source
make
./STAR
...
...
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