revised install instructions for deeptools and STAR

tool_setup.sh

 ## DeepTools
 
-cd ~/bin
-git clone https://github.com/dpryan79/pyBigWig.git
-cd pyBigWig
-python3 setup.py install --user
-
-#easy_install-2.7 --user cython
-wget http://cython.org/release/Cython-0.24.tar.gz
-tar xvf Cython-0.24.tar.gz
-cd Cython-0.24
-python2 setup.py install --user
-
-
-cd ~/bin
-git clone https://github.com/pysam-developers/pysam
-cd pysam
-#python2 setup.py clean
-python2 setup.py install --user
-
-
+#cd ~/bin
+#git clone https://github.com/dpryan79/pyBigWig.git
+#cd pyBigWig
+#python3 setup.py install --user
+#
+##easy_install-2.7 --user cython
+#wget http://cython.org/release/Cython-0.24.tar.gz
+#tar xvf Cython-0.24.tar.gz
+#cd Cython-0.24
+#python2 setup.py install --user
+#
+#
+#cd ~/bin
+#git clone https://github.com/pysam-developers/pysam
+#cd pysam
+##python2 setup.py clean
+#python2 setup.py install --user
+#
+#
 cd ~/bin
 wget -O deepTools-2.4.2.tar.gz wget https://github.com/fidelram/deepTools/archive/2.4.2.tar.gz
 tar xvf deepTools-2.4.2.tar.gz
@@ -155,8 +155,9 @@ make
 cd ~/bin
 wget https://github.com/alexdobin/STAR/archive/2.5.2b.tar.gz
 tar xvf 2.5.2b.tar.gz
-cd STAR-2.5.2b/sources
+cd STAR-2.5.2b/source
 make
+./STAR