diff --git a/common/cp_enrichment.R b/common/cp_enrichment.R index caa561bfd579d14c5aad54a237aa2fd06f53ef1d..f05ef6228492d69073a3f63dfbb50a86e2ff0008 100755 --- a/common/cp_enrichment.R +++ b/common/cp_enrichment.R @@ -127,7 +127,7 @@ annoDb <- guess_anno_db(geneLists$ensembl_gene_id) # e.g. "org.Hs.eg.db" #idType("org.Hs.eg.db") ## convert to entrez gene ids -sessionInfo() +devtools::session_info() glMappedRaw <- clusterProfiler::bitr(geneLists$ensembl_gene_id, fromType="ENSEMBL", toType="ENTREZID", annoDb=annoDb) %>% set_names("ensembl_gene_id", "entrez_gene_id") %>% right_join(geneLists)