diff --git a/common/cp_enrichment.R b/common/cp_enrichment.R index de1377c9d02a5f9faceed3f4be3ed0f397ed142a..3e7661f451350844b292a1f7dcc8ee08678765f0 100755 --- a/common/cp_enrichment.R +++ b/common/cp_enrichment.R @@ -18,9 +18,9 @@ Options: opts <- docopt(doc, commandArgs(TRUE)) ## does not work when spining # opts <- docopt(doc, "--overlay_expr_data ../plot_score_matrix.txt ../degs_by_contrast.txt contrast" ) -devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.21/R/core_commons.R") -devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.21/R/ggplot_commons.R") -devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.21/R/bio/diffex_commons.R") +devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.22/R/core_commons.R") +devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.22/R/ggplot_commons.R") +devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.22/R/bio/diffex_commons.R") require_auto(knitr) require_auto(DT) diff --git a/common/plot_kegg_pathways.R b/common/plot_kegg_pathways.R index ca67f62d608cff9ef8dd3dfabc1f678c75a141c9..23328e86bc2ec4678558869fa48062f57a548fe7 100755 --- a/common/plot_kegg_pathways.R +++ b/common/plot_kegg_pathways.R @@ -14,9 +14,9 @@ opts <- docopt(doc, commandArgs(TRUE)) ## does not work when spining # opts <- docopt(doc, "--overlay_expr_data ../plot_score_matrix.txt ../degs_by_contrast.txt contrast" ) if(!require(devtools)) install.packages("devtools") -devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.21/R/core_commons.R") -devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.21/R/ggplot_commons.R") -devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.21/R/bio/diffex_commons.R") +devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.22/R/core_commons.R") +devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.22/R/ggplot_commons.R") +devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.22/R/bio/diffex_commons.R") require_auto(knitr) require_auto(DT)