diff --git a/dge_workflow/dge_utils.sh b/dge_workflow/dge_utils.sh index 8256d68d3661ef0b23483ec630b76a394964bc5e..3b2483e2c09a066c4ef8541d41468860ee1d56f0 100755 --- a/dge_workflow/dge_utils.sh +++ b/dge_workflow/dge_utils.sh @@ -317,8 +317,8 @@ echo $gtfFile $bamsSplit | tr "," " " | xargs ls -la cdCmd="cuffdiff -L $labels -o . -p 10 $gtfFile $bamsSplit" echo "cuffdiff cmd is: $cdCmd" -eval $cdCmd -#mysub "${project}__cuffdiff" "$cdCmd" -q long -n 4 -R span[hosts=1] | blockScript +#eval $cdCmd +mysub "${project}__cuffdiff" "$cdCmd" -q long -n 4 -R span[hosts=1] | blockScript ## create a cuffdiff db using cummerbund in a temporary directory to avoid locking problems