From cd68fe727a62cfae2510fc3b157f87269a354b56 Mon Sep 17 00:00:00 2001
From: Holger Brandl <brandl@mpi-cbg.de>
Date: Thu, 21 May 2015 22:57:46 +0200
Subject: [PATCH] reenabled job submission for cuffdiff
---
dge_workflow/dge_utils.sh | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/dge_workflow/dge_utils.sh b/dge_workflow/dge_utils.sh
index 8256d68..3b2483e 100755
--- a/dge_workflow/dge_utils.sh
+++ b/dge_workflow/dge_utils.sh
@@ -317,8 +317,8 @@ echo $gtfFile $bamsSplit | tr "," " " | xargs ls -la
cdCmd="cuffdiff -L $labels -o . -p 10 $gtfFile $bamsSplit"
echo "cuffdiff cmd is: $cdCmd"
-eval $cdCmd
-#mysub "${project}__cuffdiff" "$cdCmd" -q long -n 4 -R span[hosts=1] | blockScript
+#eval $cdCmd
+mysub "${project}__cuffdiff" "$cdCmd" -q long -n 4 -R span[hosts=1] | blockScript
## create a cuffdiff db using cummerbund in a temporary directory to avoid locking problems
--
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