Merge remote-tracking branch 'origin/master'

common/igenomes/mouse_ens92.sh

@@ -46,10 +46,10 @@ samtools faidx genome.fa &
 mcdir ${IGENOME_BASE}/Annotation
 mcdir ${IGENOME_BASE}/Annotation/Genes
 
-wget ftp://ftp.ensembl.org/pub/release-88/gtf/homo_sapiens/Homo_sapiens.GRCh38.88.gtf.gz
-#wget ftp://ftp.ensembl.org/pub/release-92/gtf/mus_musculus/Mus_musculus.GRCm38.92.gtf.gz
+#wget ftp://ftp.ensembl.org/pub/release-88/gtf/homo_sapiens/Homo_sapiens.GRCh38.88.gtf.gz
+wget ftp://ftp.ensembl.org/pub/release-92/gtf/mus_musculus/Mus_musculus.GRCm38.92.gtf.gz
 
-gunzip -c Homo_sapiens.GRCh38.88.gtf.gz > genes.gtf
+gunzip -c Mus_musculus.GRCm38.92.gtf.gz > genes.gtf
 #head genes.gtf
 
 ll ${IGENOME_BASE}/Sequence/WholeGenomeFasta/genome.fa
@@ -75,4 +75,6 @@ jl submit "kallisto index -i ${refFasta}.kallisto.idx ${refFasta}"
 jl wait --email
 wait # for star index creation
 
-mailme "igenome build done in $(pwd)"
\ No newline at end of file
+mailme "igenome build done in $(pwd)"
+
+chmod -R u-w ${IGENOME_BASE}