Commit e49c69ea authored by Lena Hersemann's avatar Lena Hersemann
Browse files

Merge remote-tracking branch 'origin/master'

parents 9ee74d5b 4ad913ba
...@@ -46,10 +46,10 @@ samtools faidx genome.fa & ...@@ -46,10 +46,10 @@ samtools faidx genome.fa &
mcdir ${IGENOME_BASE}/Annotation mcdir ${IGENOME_BASE}/Annotation
mcdir ${IGENOME_BASE}/Annotation/Genes mcdir ${IGENOME_BASE}/Annotation/Genes
wget #wget
#wget wget
gunzip -c Homo_sapiens.GRCh38.88.gtf.gz > genes.gtf gunzip -c Mus_musculus.GRCm38.92.gtf.gz > genes.gtf
#head genes.gtf #head genes.gtf
ll ${IGENOME_BASE}/Sequence/WholeGenomeFasta/genome.fa ll ${IGENOME_BASE}/Sequence/WholeGenomeFasta/genome.fa
...@@ -75,4 +75,6 @@ jl submit "kallisto index -i ${refFasta}.kallisto.idx ${refFasta}" ...@@ -75,4 +75,6 @@ jl submit "kallisto index -i ${refFasta}.kallisto.idx ${refFasta}"
jl wait --email jl wait --email
wait # for star index creation wait # for star index creation
mailme "igenome build done in $(pwd)" mailme "igenome build done in $(pwd)"
\ No newline at end of file
chmod -R u-w ${IGENOME_BASE}
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