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bioinfo
ngs_tools
Commits
f74a8f8c
Commit
f74a8f8c
authored
May 03, 2018
by
Holger Brandl
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fixed arg check in dge_bigwig
parent
3417e5b5
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3 deletions
+5
-3
dge_workflow/dge_utils.sh
dge_workflow/dge_utils.sh
+5
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dge_workflow/dge_utils.sh
View file @
f74a8f8c
...
...
@@ -190,13 +190,15 @@ fi
genomeFai
=
$1
bamFiles
=
"
${
@
:2
}
"
if
[
!
-f
"
${
genomeFai
}
"
]
;
then
echo
"could not find fai index
$1
!
${
usage
}
"
>
&2
;
return
;
if
[
!
-f
"
${
genomeFai
}
"
]
||
[
${
genomeFai
:
-4
}
!=
".fai"
]
;
then
echo
"Could not find fai index
$1
!
${
usage
}
"
>
&2
;
return
;
fi
if
[
-z
"
$(
which wigToBigWig 2>/dev/null
)
"
]
;
then
echo
"could not find wigToBigWig in PATH!
${
usage
}
"
>
&2
;
#return;
echo
"Could not find wigToBigWig in PATH!
${
usage
}
"
>
&2
;
#return;
fi
jl reset .bigwig
...
...
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