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Commit f8d4fbf4 authored by Holger Brandl's avatar Holger Brandl
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updated todo

parent 43b8e6fb
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dge_workflow/dge_star_template.sh
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...@@ -141,11 +141,13 @@ rend.R -e ${NGS_TOOLS}/common/cp_enrichment.R --overlay_expr_data ../plot_score_ ...@@ -141,11 +141,13 @@ rend.R -e ${NGS_TOOLS}/common/cp_enrichment.R --overlay_expr_data ../plot_score_
### Sync back to project space ### Sync back to project space
## version common tools ## version common tools
## todo make sure to stay in current directory #{ (cd ${NGS_TOOLS} && git describe --tags) } >> .used_ngs_tools
(cd ${NGS_TOOLS} && test -n "$project" && git diff --exit-code && git tag "${project}__$(date +'%Y%m%d')") || echo "could not tag current branch" (cd ${NGS_TOOLS} && test -n "$project" && git diff --exit-code && git tag "${project}__$(date +'%Y%m%d')") || echo "could not tag current branch"
# and log it # and log it
git describe --tags >> ${baseDir}/.used_ngs_tools git describe --tags >> ${baseDir}/.used_ngs_tools
## bidirectional sync with project space ## bidirectional sync with project space
#remoteProjectDir=/net/fileserver-nfs/stornext/snfs3/projects/ TODO define mount path on bioinfo for bidirectional synching #remoteProjectDir=/net/fileserver-nfs/stornext/snfs3/projects/ TODO define mount path on bioinfo for bidirectional synching
(ls "${remoteProjectDir}" "${baseDir}" && ~/bin/unison ${baseDir} ${remoteProjectDir}/data -fastcheck -times -perms 0 -batch) || echo "could not sync data" (ls "${remoteProjectDir}" "${baseDir}" && ~/bin/unison ${baseDir} ${remoteProjectDir}/data -fastcheck -times -perms 0 -batch) || echo "could not sync data"
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