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bioinfo
ngs_tools
Commits
fc7e9865
Commit
fc7e9865
authored
Aug 16, 2018
by
Holger Brandl
Browse files
increased memory for bigwig creation
parent
25ba726e
Changes
1
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Inline
Side-by-side
dge_workflow/dge_utils.sh
View file @
fc7e9865
...
@@ -209,7 +209,7 @@ for bamFile in $bamFiles; do
...
@@ -209,7 +209,7 @@ for bamFile in $bamFiles; do
sample
=
$(
basename
$bamFile
.bam
)
sample
=
$(
basename
$bamFile
.bam
)
echo
"converting
$bamFile
to bigwig format"
echo
"converting
$bamFile
to bigwig format"
jl submit
-j
.bigwig
-w
10:00
-n
"
${
PRJ_NAME
}
__bw__
${
sample
}
"
"genomeCoverageBed -split -bg -ibam
$bamFile
-g
${
genomeFai
}
| wigToBigWig -clip stdin
${
genomeFai
}
${
sample
}
.bw"
jl submit
-j
.bigwig
-w
10:00
-m
50g
-n
"
${
PRJ_NAME
}
__bw__
${
sample
}
"
"genomeCoverageBed -split -bg -ibam
$bamFile
-g
${
genomeFai
}
| wigToBigWig -clip stdin
${
genomeFai
}
${
sample
}
.bw"
done
done
jl
wait
--report
.bigwig
jl
wait
--report
.bigwig
...
...
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