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Commit fc7e9865 authored by Holger Brandl's avatar Holger Brandl
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increased memory for bigwig creation

parent 25ba726e
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dge_workflow/dge_utils.sh
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...@@ -209,7 +209,7 @@ for bamFile in $bamFiles; do ...@@ -209,7 +209,7 @@ for bamFile in $bamFiles; do
sample=$(basename $bamFile .bam) sample=$(basename $bamFile .bam)
echo "converting $bamFile to bigwig format" echo "converting $bamFile to bigwig format"
jl submit -j .bigwig -w 10:00 -n "${PRJ_NAME}__bw__${sample}" "genomeCoverageBed -split -bg -ibam $bamFile -g ${genomeFai} | wigToBigWig -clip stdin ${genomeFai} ${sample}.bw" jl submit -j .bigwig -w 10:00 -m 50g -n "${PRJ_NAME}__bw__${sample}" "genomeCoverageBed -split -bg -ibam $bamFile -g ${genomeFai} | wigToBigWig -clip stdin ${genomeFai} ${sample}.bw"
done done
jl wait --report .bigwig jl wait --report .bigwig
......
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