Commit fc7e9865 authored by Holger Brandl's avatar Holger Brandl
Browse files

increased memory for bigwig creation

parent 25ba726e
......@@ -209,7 +209,7 @@ for bamFile in $bamFiles; do
sample=$(basename $bamFile .bam)
echo "converting $bamFile to bigwig format"
jl submit -j .bigwig -w 10:00 -n "${PRJ_NAME}__bw__${sample}" "genomeCoverageBed -split -bg -ibam $bamFile -g ${genomeFai} | wigToBigWig -clip stdin ${genomeFai} ${sample}.bw"
jl submit -j .bigwig -w 10:00 -m 50g -n "${PRJ_NAME}__bw__${sample}" "genomeCoverageBed -split -bg -ibam $bamFile -g ${genomeFai} | wigToBigWig -clip stdin ${genomeFai} ${sample}.bw"
jl wait --report .bigwig
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