Commits · 7a440b21c6bfd751e5c519fad927308dfa249316 · bioinfo / ngs_tools

22 Jan, 2018 1 commit
- matched node.sum config with cp_enrichment.R · 7a440b21
  Holger Brandl authored Jan 22, 2018
  
  7a440b21
19 Jan, 2018 9 commits
- removed duplicated pathway rendering · cc61f7ea
  Holger Brandl authored Jan 19, 2018
  
  cc61f7ea
- used fixed port for expression explorer · 68cd1899
  Holger Brandl authored Jan 19, 2018
  
  68cd1899
- added icon to expression explorer · 2fa83cdf
  Holger Brandl authored Jan 19, 2018
  
  2fa83cdf
- fixed shebang · 31c03c20
  Holger Brandl authored Jan 19, 2018
  
  31c03c20
- replaced score rounding impl · e8c671e4
  Holger Brandl authored Jan 19, 2018
  
  e8c671e4
- fixed typo in docs · 4d51c7a8
  Holger Brandl authored Jan 19, 2018
  
  4d51c7a8
- added multi id test example · f0c57753
  Holger Brandl authored Jan 19, 2018
  
  f0c57753
- more eyefriendly ci width · 6a5be93a
  Holger Brandl authored Jan 19, 2018
  
  6a5be93a
- added url parameters for gene_id and gene_name · 1a623b17
  Holger Brandl authored Jan 19, 2018
  
  1a623b17
18 Jan, 2018 2 commits
- appify explorer app without bash wrapper · 9e535dfc
  Holger Brandl authored Jan 18, 2018
  
  9e535dfc
- added support for reportName inheritance · 788904dd
  Holger Brandl authored Jan 18, 2018
  
  788904dd
16 Jan, 2018 1 commit
- added cellranger docker notes · d17cae39
  Holger Brandl authored Jan 16, 2018
  
  d17cae39
15 Jan, 2018 1 commit
- removed bug; cosmetics · 3639fda3
  Lena Hersemann authored Jan 15, 2018
  
  3639fda3
12 Jan, 2018 9 commits
- Merge remote-tracking branch 'origin/master' · 9440a74e
  Lena Hersemann authored Jan 12, 2018
  
  9440a74e
- removed filtering step · a28a1252
  Lena Hersemann authored Jan 12, 2018
  
  a28a1252
- Merge branch 'master' of git.mpi-cbg.de:bioinfo/ngs_tools · fc8466c4
  Holger Brandl authored Jan 12, 2018
  
  fc8466c4
- inc jl to v0.7.1 · e8bb79f0
  Holger Brandl authored Jan 12, 2018
  
  e8bb79f0
- changed y-axis labeling and processing of the basic_design file · 68335f0c
  Lena Hersemann authored Jan 12, 2018
  
  68335f0c
- corrected query of required files (dge_create_explorer_app) · cbb9aae0
  Lena Hersemann authored Jan 12, 2018
  
  cbb9aae0
- fixed and modernized pathway report · 9704f7c1
  Holger Brandl authored Jan 12, 2018
  
  9704f7c1
- simplified explorer app creation · 62dcb2a0
  Holger Brandl authored Jan 12, 2018
  
  62dcb2a0
- fixed incorrect mart for enrichment reporting · f3331dde
  Holger Brandl authored Jan 12, 2018
  
  f3331dde
11 Jan, 2018 4 commits
- finished tx diffex analysis · d613e1e7
  Holger Brandl authored Jan 11, 2018
  
  d613e1e7
- moved session info from report into session dump · 2b3e3861
  Holger Brandl authored Jan 11, 2018
  
  2b3e3861
- improved kallisto helpers · 73e775dd
  Holger Brandl authored Jan 11, 2018
  
  73e775dd
- added count matrix export · 65365206
  Holger Brandl authored Jan 11, 2018
  
  65365206
10 Jan, 2018 3 commits
- added export of the basic design file updated with information on the cells'... · edb2efee
  Lena Hersemann authored Jan 10, 2018
```
added export of the basic design file updated with information on the cells' cell cycle phases; changed exported session file to a dot file
```
  edb2efee
- Merge remote-tracking branch 'origin/master' · 3d505d8e
  Lena Hersemann authored Jan 10, 2018
  
  3d505d8e
- added export of combined STAR and kallisto dataset; changed setting from 5% to... · 910e3fdf
  Lena Hersemann authored Jan 10, 2018
```
added export of combined STAR and kallisto dataset; changed setting from 5% to 1% of most divergent counts; cosmetics
```
  910e3fdf
09 Jan, 2018 8 commits
- included saturation plot based on simulated sequencing depths · 51e6d119
  Lena Hersemann authored Jan 09, 2018
  
  51e6d119
- fixed typo in index suffix · 51c13e4f
  Holger Brandl authored Jan 09, 2018
  
  51c13e4f
- Merge branch 'master' of git.mpi-cbg.de:bioinfo/ngs_tools · 30ef626f
  Holger Brandl authored Jan 09, 2018
  
  30ef626f
- Merge remote-tracking branch 'origin/master' · 6b2d9ddd
  Lena Hersemann authored Jan 09, 2018
  
  6b2d9ddd
- more robust cluster bioinfo sync for indices · 591c4d31
  Holger Brandl authored Jan 09, 2018
  
  591c4d31
- fixed bug in the step where the list of SingleCellExperiment objects is created · c74efbc1
  Lena Hersemann authored Jan 09, 2018
  
  c74efbc1
- better indexing parallelization · d7555041
  Holger Brandl authored Jan 09, 2018
  
  d7555041
- separated genome indexing into own script · 06239e74
  Holger Brandl authored Jan 09, 2018
  
  06239e74
08 Jan, 2018 2 commits
- Merge remote-tracking branch 'origin/master' · a633446f
  Lena Hersemann authored Jan 08, 2018
  
  a633446f
- started script to perform quality control of single cell RNAseq data. This is... · 76b0f3cf
  Lena Hersemann authored Jan 08, 2018
```
started script to perform quality control of single cell RNAseq data. This is the first script of our new workflow, i.e. sc_workflow/
```
  76b0f3cf