1. 25 Sep, 2020 1 commit
  2. 23 Sep, 2020 2 commits
  3. 18 Sep, 2020 1 commit
  4. 17 Sep, 2020 1 commit
    • domingue's avatar
      Produce results by contrast · 11af63fd
      domingue authored
      - loops over contrasts
      - added test arguments for set size
      - saves fgsea graphical table and sources it to markdown
      - results table contains contrasts
      
      Closes #96
      11af63fd
  5. 15 Sep, 2020 2 commits
  6. 09 Sep, 2020 2 commits
    • domingue's avatar
      Bug fix · 24f966e8
      domingue authored
      - The logical test to check if there was at least one gene set input was always defaulting to TRUE.
      - List of genes is created even if the --gmt_file is the only option set
      24f966e8
    • domingue's avatar
      Added option for custom gene sets · 49cfb784
      domingue authored
      - flexible enough that any of --gmt_file, --extra_sets, or --category can be used
      - fixed minor typo in help
      - styled script
      
      See #93
      49cfb784
  7. 19 Aug, 2020 4 commits
  8. 18 Aug, 2020 1 commit
    • domingue's avatar
      Major update to make the script work · 836a9ad0
      domingue authored
      - updated links to source functions since at least one of them was dead (404 error)
      - replaced `loadpack` with `load_pack`
      - fixed bug in logical test for results prefix
      - updated deprecated functions
      - added function calls with  `dpplyr::` due to function name conflicts
      - removed code with functions we no longer havem for instance, `reload_dplyr`
      - updated logical test for version of clusterProfiler
      - added test arguments
      - fixed typo
      836a9ad0
  9. 07 Aug, 2020 1 commit
  10. 05 Aug, 2020 1 commit
  11. 10 Jul, 2020 1 commit
  12. 01 Jul, 2020 1 commit
  13. 30 Jun, 2020 1 commit
  14. 26 Jun, 2020 2 commits
  15. 25 Jun, 2020 1 commit
  16. 24 Jun, 2020 1 commit
    • domingue's avatar
      New features added · 006d591f
      domingue authored
      - added min_count argument to avoid overplotting
      - added correlation plots
      006d591f
  17. 03 Jun, 2020 1 commit
  18. 27 May, 2020 2 commits
  19. 13 May, 2020 2 commits
  20. 09 Apr, 2020 2 commits
  21. 02 Apr, 2020 1 commit
  22. 23 Mar, 2020 1 commit
  23. 20 Mar, 2020 2 commits
  24. 19 Mar, 2020 1 commit
  25. 18 Mar, 2020 2 commits
  26. 17 Mar, 2020 3 commits