1. 19 Nov, 2020 1 commit
  2. 07 Oct, 2020 1 commit
    • domingue's avatar
      Bug fix: random selection of genes if list is too large · 976dbd42
      domingue authored
      - `cp_test` was randomly selecting 1500 genes if the input was larger than this number
      - this lead to irreproducibility
      - fix was to remove this line, and add the fixed function to the script, replacing the sourced code
      
      Fixes #98
      976dbd42
  3. 01 Oct, 2020 2 commits
    • domingue's avatar
      Added cellranger · b431e9b4
      domingue authored
      b431e9b4
    • domingue's avatar
      Fix bug: padj = 0 breaks script · e1ad6ffa
      domingue authored
      - for very small values, < 2.225074e-308,  `R` will round to zero because
      they are bellow the precision point
      - zeros lead to Inf values when calculating the Rank values which error
      - solution was to replace zeros with a very small value, the lowest
      precision point
      e1ad6ffa
  4. 28 Sep, 2020 2 commits
  5. 23 Sep, 2020 2 commits
  6. 18 Sep, 2020 1 commit
  7. 17 Sep, 2020 1 commit
    • domingue's avatar
      Produce results by contrast · 11af63fd
      domingue authored
      - loops over contrasts
      - added test arguments for set size
      - saves fgsea graphical table and sources it to markdown
      - results table contains contrasts
      
      Closes #96
      11af63fd
  8. 15 Sep, 2020 2 commits
  9. 09 Sep, 2020 2 commits
    • domingue's avatar
      Bug fix · 24f966e8
      domingue authored
      - The logical test to check if there was at least one gene set input was always defaulting to TRUE.
      - List of genes is created even if the --gmt_file is the only option set
      24f966e8
    • domingue's avatar
      Added option for custom gene sets · 49cfb784
      domingue authored
      - flexible enough that any of --gmt_file, --extra_sets, or --category can be used
      - fixed minor typo in help
      - styled script
      
      See #93
      49cfb784
  10. 19 Aug, 2020 4 commits
  11. 07 Aug, 2020 1 commit
  12. 05 Aug, 2020 1 commit
  13. 10 Jul, 2020 1 commit
  14. 01 Jul, 2020 1 commit
  15. 30 Jun, 2020 1 commit
  16. 26 Jun, 2020 2 commits
  17. 25 Jun, 2020 1 commit
  18. 24 Jun, 2020 1 commit
    • domingue's avatar
      New features added · 006d591f
      domingue authored
      - added min_count argument to avoid overplotting
      - added correlation plots
      006d591f
  19. 03 Jun, 2020 1 commit
  20. 27 May, 2020 2 commits
  21. 13 May, 2020 2 commits
  22. 09 Apr, 2020 2 commits
  23. 02 Apr, 2020 1 commit
  24. 23 Mar, 2020 1 commit
  25. 20 Mar, 2020 2 commits
  26. 19 Mar, 2020 1 commit
  27. 18 Mar, 2020 1 commit