1. 19 May, 2021 1 commit
  2. 16 Apr, 2021 2 commits
  3. 08 Apr, 2021 6 commits
  4. 23 Mar, 2021 1 commit
  5. 10 Mar, 2021 1 commit
  6. 05 Mar, 2021 1 commit
  7. 28 Feb, 2021 1 commit
  8. 25 Feb, 2021 1 commit
  9. 24 Feb, 2021 1 commit
  10. 13 Dec, 2020 1 commit
  11. 25 Nov, 2020 1 commit
  12. 19 Nov, 2020 1 commit
  13. 07 Oct, 2020 1 commit
    • domingue's avatar
      Bug fix: random selection of genes if list is too large · 976dbd42
      domingue authored
      - `cp_test` was randomly selecting 1500 genes if the input was larger than this number
      - this lead to irreproducibility
      - fix was to remove this line, and add the fixed function to the script, replacing the sourced code
      
      Fixes #98
      976dbd42
  14. 01 Oct, 2020 2 commits
    • domingue's avatar
      Added cellranger · b431e9b4
      domingue authored
      b431e9b4
    • domingue's avatar
      Fix bug: padj = 0 breaks script · e1ad6ffa
      domingue authored
      - for very small values, < 2.225074e-308,  `R` will round to zero because
      they are bellow the precision point
      - zeros lead to Inf values when calculating the Rank values which error
      - solution was to replace zeros with a very small value, the lowest
      precision point
      e1ad6ffa
  15. 28 Sep, 2020 2 commits
  16. 23 Sep, 2020 2 commits
  17. 18 Sep, 2020 1 commit
  18. 17 Sep, 2020 1 commit
    • domingue's avatar
      Produce results by contrast · 11af63fd
      domingue authored
      - loops over contrasts
      - added test arguments for set size
      - saves fgsea graphical table and sources it to markdown
      - results table contains contrasts
      
      Closes #96
      11af63fd
  19. 15 Sep, 2020 2 commits
  20. 09 Sep, 2020 2 commits
    • domingue's avatar
      Bug fix · 24f966e8
      domingue authored
      - The logical test to check if there was at least one gene set input was always defaulting to TRUE.
      - List of genes is created even if the --gmt_file is the only option set
      24f966e8
    • domingue's avatar
      Added option for custom gene sets · 49cfb784
      domingue authored
      - flexible enough that any of --gmt_file, --extra_sets, or --category can be used
      - fixed minor typo in help
      - styled script
      
      See #93
      49cfb784
  21. 19 Aug, 2020 4 commits
  22. 07 Aug, 2020 1 commit
  23. 05 Aug, 2020 1 commit
  24. 10 Jul, 2020 1 commit
  25. 01 Jul, 2020 1 commit
  26. 30 Jun, 2020 1 commit