Issues · bioinfo / ngs_tools · GitLab

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Issue gsea: improvments 2 of 4 checklist items completed

#97 created 4 years ago by domingue
rna_seq
updated 4 years ago
Issue Stranded counts

#88 created 5 years ago by domingue
rna_seq
updated 4 years ago
Issue ms_workflow: improve the results heatmap 2 of 3 checklist items completed

#66 created 5 years ago by domingue
mass_spec
updated 5 years ago
Issue dge workflow: add GTF an argument for differential gene expression

#57 created 5 years ago by domingue
rna_seq
updated 5 years ago
Issue dge_workflow: report number of reads per gene

#51 created 5 years ago by herseman
updated 4 years ago
Issue general: create templates for R scripts and shinyApps and revise the dge_star_template

#50 created 5 years ago by herseman
updated 5 years ago
Issue ms_workflow: move to peptide level

#45 created 6 years ago by herseman
updated 5 years ago
Issue ms_workflow: handling of technical replicates

#40 created 6 years ago by herseman
mass_spec
updated 5 years ago
Issue general: create customized docker files for individual analyses done with our ngs_tools scripts

#39 created 6 years ago by herseman
updated 6 years ago
Issue sc_workflow: write single script for Seurat workflow with tested and approved settings

#35 created 6 years ago by herseman
updated 6 years ago
Issue ms_workflow: aggregate protein isoforms data on gene level

#32 created 6 years ago by herseman
mass_spec
updated 6 years ago
Issue ms_workflow: report number of peptides (unique and razor peptides) for each protein group

#31 created 6 years ago by herseman
mass_spec
updated 6 years ago
Issue DESeq2 check current clustering method

#24 created 7 years ago by herseman
updated 6 years ago
Issue run kallisto parallel to STAR

#21 created 7 years ago by herseman
Issue report proportion of multi-mappers in STAR report

#20 created 7 years ago by herseman
updated 7 years ago