ngs_tools issueshttps://git.mpi-cbg.de/bioinfo/ngs_tools/-/issues2019-02-08T14:31:53Zhttps://git.mpi-cbg.de/bioinfo/ngs_tools/-/issues/31ms_workflow: report number of peptides (unique and razor peptides) for each p...2019-02-08T14:31:53Zhersemanms_workflow: report number of peptides (unique and razor peptides) for each protein grouphersemanhersemanhttps://git.mpi-cbg.de/bioinfo/ngs_tools/-/issues/32ms_workflow: aggregate protein isoforms data on gene level2019-02-08T14:31:39Zhersemanms_workflow: aggregate protein isoforms data on gene level- extract data on gene IDs and uniprot IDs from Ensembl
- check correlation of ensembl and uniprot IDs
- check if it's possible to further aggregate protein groups based on gene level- extract data on gene IDs and uniprot IDs from Ensembl
- check correlation of ensembl and uniprot IDs
- check if it's possible to further aggregate protein groups based on gene levelhersemanhersemanhttps://git.mpi-cbg.de/bioinfo/ngs_tools/-/issues/40ms_workflow: handling of technical replicates2019-12-09T16:32:07Zhersemanms_workflow: handling of technical replicatesso far technical replicates are not taken into account and we only process MaxQuant outputs with only one technical replicate; it would be nice to integrate the information on technical variability but this should of course be verified w...so far technical replicates are not taken into account and we only process MaxQuant outputs with only one technical replicate; it would be nice to integrate the information on technical variability but this should of course be verified with an appropriate test data set; for now we should at least modify our pipeline in a way that it averages technical replicates as part of the workflow and reports the technical variation.hersemandominguehersemanhttps://git.mpi-cbg.de/bioinfo/ngs_tools/-/issues/66ms_workflow: improve the results heatmap2019-08-23T13:54:28Zdominguems_workflow: improve the results heatmapSuggested by Olya:
- [x] add gene names to the rows
- [x] include plots as long as there _any_ hit
- [ ] move legend to the bottom
Some of the text accompanying the plots is now showing.Suggested by Olya:
- [x] add gene names to the rows
- [x] include plots as long as there _any_ hit
- [ ] move legend to the bottom
Some of the text accompanying the plots is now showing.dominguedomingue