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  • #36

Closed
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Created Feb 06, 2019 by herseman@hersemanOwner

ms_workflow: add additional quality metrics to the differential abundance analysis output

  • take the intensities of the standard as a minimal threshold to mark low-abundant proteins
  • summarize MS/MS information as numeric value per gene and condition (e.g. percentage of MS/MS identifications per gene across all replicates); additionally include some summary of identification types per sample in the ms_data_prep.R script)
  • report for which entries the proteinGroups order has been changed by sorting
  • add information per gene whether the value for any replicate per condition has been imputed
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