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  • bioinfo
  • ngs_tools
  • Issues

  • Open 4
  • Closed 17
  • All 21
New issue
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Title
  • DEP installation on falcon - nc-config missing
    #65 · created Aug 14, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Sep 17, 2019
  • Implement renvs
    #73 · created Sep 16, 2019 by domingue   mass_spec rna_seq
    • CLOSED
    • 2
    updated Feb 20, 2020
  • ms_worflow: bug in heatmap clustering
    #69 · created Aug 27, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 28, 2019
  • ms_workflow: add additional quality metrics to the differential abundance analysis output
    #36 · created Feb 06, 2019 by herseman   mass_spec
    • CLOSED
    • 3
    updated Mar 08, 2019
  • ms_workflow: add intensities to results table
    #60 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 2
    updated Aug 09, 2019
  • ms_workflow: add more explanations
    #63 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 09, 2019
  • ms_workflow: add % of NAs to results table
    #61 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 09, 2019
  • ms_workflow: Add table with % of contaminants in the most abudant proteins
    #68 · created Aug 26, 2019 by domingue   mass_spec
    • CLOSED
    • 0
    updated Aug 26, 2019
  • ms_workflow: handling of contaminations
    #37 · created Feb 08, 2019 by herseman   mass_spec
    • CLOSED
    • 1
    updated Dec 10, 2019
  • ms_workflow: Improvemnts   7 of 9 tasks completed
    #28 · created Dec 07, 2018 by brandl   mass_spec
    • CLOSED
    • 3
    updated Dec 10, 2019
  • ms_workflow: ms_limma.R returns error when no differentially abundant proteins were found
    #41 · created Feb 14, 2019 by herseman   mass_spec
    • CLOSED
    • 1
    updated Feb 14, 2019
  • ms_workflow: ms_ms_prop and reorder information are missing for protein IDs without fasta_header information
    #86 · created Mar 17, 2020 by herseman   mass_spec
    • CLOSED
    • 1
    updated Mar 17, 2020
  • ms_workflow: QC improvments
    #64 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 1
    updated Aug 13, 2019
  • ms_workflow: refine reorder information of protein groups
    #83 · created Feb 18, 2020 by herseman   mass_spec
    • CLOSED
    • 1
    updated Feb 18, 2020
  • ms_workflow: replace PCA with plotly
    #62 · created Aug 09, 2019 by domingue   mass_spec
    • CLOSED
    • 2
    updated Aug 09, 2019
  • ms_workflow: report settings from MaxQuant log file
    #33 · created Jan 15, 2019 by herseman   mass_spec
    • CLOSED
    • 2
    updated Feb 12, 2019
  • updating ms_workflow
    #79 · created Jan 23, 2020 by herseman   mass_spec
    • CLOSED
    • 14
    updated Jul 13, 2020